RetrogeneDB ID: | retro_cpor_822 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:15410349..15411125(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RSL1D1 | ||
Ensembl ID: | ENSCPOG00000010630 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.29 % |
Parental protein coverage: | 92.17 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ATSSELTSLEQLDKKQIRKAVEALLTQSKSRKNKNGLLLNENESLFLMVVLWKIPGKELKVKLLLPHHIR |
.T..ELTSLEQ.DKKQ.RKAVEALLTQ.K.RKNKNGLLLNENE.LFLMVVLWKIPGKEL.V.L.LP..I. | |
Retrocopy | STPTELTSLEQPDKKQVRKAVEALLTQ*KCRKNKNGLLLNENENLFLMVVLWKIPGKELRVRLSLPPSIQ |
Parental | SDLSEICLFTKDELQSAE-QTERFYRKLLNKHGIKTISRIIPFRTLKTEYKAYESKLQLLNSFDFFLTDE |
SDLSEICLFTKDELQS.E..TE.FYRKLLNKHGIKT.S.I.PF.TLKTEYKAYE.KL.LLNSFDFFL.DE | |
Retrocopy | SDLSEICLFTKDELQSTETETEHFYRKLLNKHGIKTVSQISPFQTLKTEYKAYEAKLLLLNSFDFFLSDE |
Parental | RIRRLLPSHIGRHFYQR-KKVPVSVNLLAKNLSEEINNSLGGTVLNISKSGSCSSVRIGHTGMRAQDITE |
RI..LLP..I..HFY.R.KKVPVSVNLLAKNLSEEINNSLGGTVLNI.K..S.S...IGH.GM.AQD.T. | |
Retrocopy | RIMWLLPLQIEKHFYRR>KKVPVSVNLLAKNLSEEINNSLGGTVLNIYKRDSYSTICIGHVGM*AQDVTD |
Parental | -NIVAVAEGLSKKLPEKW-ESVKLLFVKTGKSVSLPIFSSFVSCQNETNKMLI |
...VAVAE.LS..LPEKW.ESVKLL.VKTG.....P.F.S....QNET.KM.I | |
Retrocopy | <HFVAVAENLSEQLPEKW<ESVKLLSVKTGSWFPFPLFLS-IFYQNETKKMFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .70 RPM |
SRP017611_liver | 0 .00 RPM | 26 .29 RPM |
SRP040447_lung | 0 .00 RPM | 21 .66 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 19 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018865 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000010827 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008375 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010630 | 3 retrocopies |
retro_cpor_1262, retro_cpor_276, retro_cpor_822 ,
|
Loxodonta africana | ENSLAFG00000013664 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000784 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000029494 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015151 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048608 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016705 | 1 retrocopy |