Parental gene:

ENSCJAG00000002987

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:75266260..75299343(+)


>ENSCJAG00000002987
TTACAGATGATCAGTGCAGAAGCCCCTGTACTCTTTGCCAAGGCAGCCCAGATTTTTATCACAGAGTTGACTCTTCGAGC
CTGGATTCACACAGAGGATAACAAGCGTCGGACTCTACAGAGAAATGATATCGCCATGGCAATTACAAAATTTGATCAGT
TTGACTTTCTCATCGATATTGTTCCAAGAGATGAACTGAAACCTCCAAAGCGTCAGGAGGAGGTGCGCCAGTCTGTAACT
CCTGCTGAGCCAGTCCAGTACTATTTCACACTGGCTCAGCAGCCCACCGCCGTCCAAGTCCAGGGGCAGCAGCAAGGCCA
GCAGACCACCAGCTCCACGACCACCATCCAGCCTGGGCAGATCATCATTGCACAGCCTCAGCAGGGCCAGGTCTACAGTG
TCCCTCTGGAAACTGGAACTTTTCCCCAGATTCAGTTCCTGGGGGGACTTTTTTCAGGGCAGGCTTCTTTGGAGGGCTTG
AGGGGTAGGGGGCAATCACCATCTCTGGTCATAGAAAATTATACTCAATGTCTTATGGTGCAGTTGAACGCCGGCCAGTT
GCAGTATATTCGCTTAGCCCAGCCTGTATCAGGCACCCAAGTTGTGCAGGGACAGATCCAGACACTTGCCACCAATGCTC
AACAGGGGCAGAGAAATGCAAGTCATGGGCCTCGAAGGTGCCTGAAAGAAACCTTAATTACACAGACAGAGGTCCAGCAA
GGACAGCAGCAGTTCAGCCAGTTCACAGATGGACAGAGGAACAGCGTGCAGCAAGCTCGAGTCTCTGAGCTAACGGGAGA
GGCAGAGCCCAGAGAAGTGAAAGCCACAGGAAATTCAACTCCCTGCACCTCTTCCCTGCCCACCACACACCCCCCCTCAC
ACCGGGCTGGTGCCTCCTGTGTCTGCTGCTCCCAACCCCAGCAGAGCTCCACATCCCCTCCTCCTTCTGACGCCTTGCAG
TGGGTGGTGGTTGAGGTATCTGGGACCCCCAACCAGCTCGAGACCCATAGGGAGCTGCATGCCCCTCTCCCAGGGGTGAC
CTCACTCTCTCCTCTCCACCCCTCGCAGCAGCTCTACCAGATCCAGCAAGTCACCATGCCTGCAGGCCAGGACCTCGCCC
AGCCCATGTTCATCCAGTCAGCCAACCAGCCCTCCGACGGGCAGGCCCCCCAGGTGACCGGCGACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 13 .49 RPM
SRP051959_skeletal_muscle 7 .82 RPM
SRP051959_lymph_node 13 .26 RPM
SRP051959_lung 12 .10 RPM
SRP051959_liver 8 .12 RPM
SRP051959_kidney 18 .19 RPM
SRP051959_heart 13 .66 RPM
SRP051959_colon 8 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000012591 possible_ortholog 1 retrogene
retro_acar_33,
Bos taurus ENSBTAG00000021943 possible_ortholog 1 retrogene
retro_btau_1338,
Callithrix jacchus ENSCJAG00000017156 within_species_paralog 1 retrogene
retro_cjac_1087,
Homo sapiens ENSG00000066136 possible_ortholog 2 retrogenes
retro_hsap_4280, retro_hsap_4668,
Gorilla gorilla ENSGGOG00000007360 possible_ortholog 2 retrogenes
retro_ggor_2865, retro_ggor_2896,
Macropus eugenii ENSMEUG00000004480 possible_ortholog 1 retrogene
retro_meug_1145,
Macaca mulatta ENSMMUG00000014970 possible_ortholog 2 retrogenes
retro_mmul_1202, retro_mmul_2485,
Mus musculus ENSMUSG00000032897 possible_ortholog 1 retrogene
retro_mmus_844,
Nomascus leucogenys ENSNLEG00000012195 ortholog_one2one 2 retrogenes
retro_nleu_2369, retro_nleu_2850,
Otolemur garnettii ENSOGAG00000012614 possible_ortholog 2 retrogenes
retro_ogar_2147, retro_ogar_411,
Pongo abelii ENSPPYG00000001483 possible_ortholog 3 retrogenes
retro_pabe_1712, retro_pabe_3490, retro_pabe_3628,
Pan troglodytes ENSPTRG00000000596 possible_ortholog 2 retrogenes
retro_ptro_2903, retro_ptro_3102,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4050 59.05 97.95
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Download FASTA sequences of all ENSCJAG00000002987 retrocopies