RetrogeneDB ID: | retro_acar_33 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 4:119865301..119866294(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000002660 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NFYC | ||
Ensembl ID: | ENSACAG00000012591 | ||
Aliases: | None | ||
Description: | nuclear transcription factor Y, gamma [Source:HGNC Symbol;Acc:7806] |
Percent Identity: | 94.42 % |
Parental protein coverage: | 64.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DELKPPKRQEEVRQAVTPAEPVQYYFTLAQQPAAVQVQGQQTGQQTTTSTATIQPGQIIIAQPQQGQTTP |
D...PPKRQEEV.QAVTPAEPVQYYFTLAQQPAAV.VQGQQTGQQTTTSTATIQ.GQIIIAQPQQGQTTP | |
Retrocopy | DIVQPPKRQEEVCQAVTPAEPVQYYFTLAQQPAAVEVQGQQTGQQTTTSTATIQLGQIIIAQPQQGQTTP |
Parental | VTMQVGEGQQVQIVQAQPQGQAQPAQSGSGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGT |
VTMQVGE.QQVQIVQAQPQGQAQPAQSGSGQTMQVMQQIITNTGEI.QIPVQLNA.QLQYIRLAQPV.GT | |
Retrocopy | VTMQVGERQQVQIVQAQPQGQAQPAQSGSGQTMQVMQQIITNTGEIEQIPVQLNASQLQYIRLAQPVFGT |
Parental | QVVQGQIQTLAANTQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDITQPMFIQSASQATDGQSP |
QVVQGQIQTLAA.TQQITQTEVQQGQQQFSQFTDGQQLYQIQQVT.PAGQDITQPMFIQSASQATDGQSP | |
Retrocopy | QVVQGQIQTLAASTQQITQTEVQQGQQQFSQFTDGQQLYQIQQVTIPAGQDITQPMFIQSASQATDGQSP |
Parental | QVTGD |
QVTGD | |
Retrocopy | QVTGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .03 RPM | 119 .24 RPM |
SRP009831_brain | 0 .05 RPM | 70 .87 RPM |
SRP009831_dewlap | 0 .00 RPM | 91 .97 RPM |
SRP009831_embryo | 0 .44 RPM | 85 .71 RPM |
SRP009831_heart | 0 .00 RPM | 113 .05 RPM |
SRP009831_liver | 0 .00 RPM | 39 .63 RPM |
SRP009831_lung | 0 .10 RPM | 70 .37 RPM |
SRP009831_ovary | 0 .00 RPM | 117 .83 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 26 .81 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000012591 | 1 retrocopy |
retro_acar_33 ,
|
Bos taurus | ENSBTAG00000021943 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002987 | 1 retrocopy | |
Homo sapiens | ENSG00000066136 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007360 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004480 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014970 | 2 retrocopies | |
Mus musculus | ENSMUSG00000032897 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012195 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000012614 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001483 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000596 | 2 retrocopies |