RetrogeneDB ID: | retro_hsap_4668 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:35779615..35780596(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233880 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NFYC | ||
Ensembl ID: | ENSG00000066136 | ||
Aliases: | NFYC, CBF-C, CBFC, H1TF2A, HAP5, HSM, NF-YC | ||
Description: | nuclear transcription factor Y, gamma [Source:HGNC Symbol;Acc:7806] |
Percent Identity: | 73.11 % |
Parental protein coverage: | 98.21 % |
Number of stop codons detected: | 15 |
Number of frameshifts detected | 2 |
Parental | FGGTSSSDAQQSLQSFWP-RVMEEIRNLTVKDFRVQELP-LARIKKIMKLDEDVKMISAEAPVLFAKAAQ |
F.GTSSS.AQ.SLQSFW.....EEI.NLTVKD..VQELP..A.IKKIMKL..DVKMIS.EAPVLFAKAAQ | |
Retrocopy | FCGTSSSNAQ*SLQSFWA>HILEEIQNLTVKDLLVQELP<TAGIKKIMKLN-DVKMISREAPVLFAKAAQ |
Parental | IFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQY |
IFITELTL.A.IHT...K..TL..ND..M.ITK.DQ..FLIDIV..DEL.PPKRQEEV.QS.TPA.P..Y | |
Retrocopy | IFITELTL*A*IHT*AKKHWTL*GNDVTMGITKLDQLNFLIDIVLTDELNPPKRQEEVCQSITPAKPI*Y |
Parental | YFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQ |
YF.LA.QP..VQV.GQQQGQ.TTSS.TTIQ.G.II..QPQQGQ..P.T.QVGEG.QVQIVQAQPQGQA.Q | |
Retrocopy | YFMLA*QPSTVQV*GQQQGQETTSSMTTIQLG*IIM-QPQQGQIMPLTVQVGEGWQVQIVQAQPQGQA*Q |
Parental | AQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQ |
..S.TGQTM.VMQQIIT.TGEIQQIPVQL..GQL.YI.L.QPVSGTQVVQ.QI..LATNAQQIT.TEVQ. | |
Retrocopy | S*SDTGQTMEVMQQIITKTGEIQQIPVQLKLGQLEYILLVQPVSGTQVVQEQI*MLATNAQQIT*TEVQ* |
Parental | GQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD |
GQ.QF.Q.TDG..LYQIQQVT.P...DL.QPMF.QS.NQ.S..Q.PQVT.D | |
Retrocopy | GQRQFNQVTDGHKLYQIQQVTIPVD*DLTQPMFNQSVNQLSYRQNPQVTHD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 31 .29 RPM |
bodymap2_adrenal | 0 .00 RPM | 49 .00 RPM |
bodymap2_brain | 0 .00 RPM | 23 .63 RPM |
bodymap2_breast | 0 .00 RPM | 32 .02 RPM |
bodymap2_colon | 0 .00 RPM | 28 .19 RPM |
bodymap2_heart | 0 .00 RPM | 28 .39 RPM |
bodymap2_kidney | 0 .00 RPM | 40 .43 RPM |
bodymap2_liver | 0 .00 RPM | 22 .12 RPM |
bodymap2_lung | 0 .00 RPM | 23 .08 RPM |
bodymap2_lymph_node | 0 .00 RPM | 40 .02 RPM |
bodymap2_ovary | 0 .00 RPM | 44 .61 RPM |
bodymap2_prostate | 0 .00 RPM | 52 .50 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 57 .38 RPM |
bodymap2_testis | 0 .00 RPM | 43 .29 RPM |
bodymap2_thyroid | 0 .00 RPM | 49 .53 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 54 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3102 |
Gorilla gorilla | retro_ggor_2896 |
Pongo abelii | retro_pabe_3628 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000012591 | 1 retrocopy | |
Bos taurus | ENSBTAG00000021943 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002987 | 1 retrocopy | |
Homo sapiens | ENSG00000066136 | 2 retrocopies |
retro_hsap_4280, retro_hsap_4668 ,
|
Homo sapiens | ENSG00000115350 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007360 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004480 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014970 | 2 retrocopies | |
Mus musculus | ENSMUSG00000032897 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012614 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001483 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000596 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |