Parental gene:

UBQLN1, ENSCJAG00000003609

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:84618192..84665733(+)


>ENSCJAG00000003609
ATGGCCGAGAGTGGTGAAAGCGGCGGCCCTCCTGGCTCCCAGGATAGCGCCGCCGGAGCCGAAGGTGCCGGCGCCTCCGC
GGCCGCTGCCTCTGCGGAGCCCAAAATTATGAAAGTCACCGTGAAGACTCCGAAGGAGAAGGAGGAATTTGCTGTGCCCG
AGAATAGCTCCGTCCAGCAGTTTAAGGAAGAAATCTCTAAACGTTTTAAATCACATACTGACCAACTTGTGTTGATATTT
GCTGGAAAAATTTTGAAAGATCAAGATACCTTGAGTCAGCATGGGATTCATGATGGACTTACTGTTCACCTTGTCATCAA
AACACAAAACAGGCCACAGGATCATTCGGCTCAGCAAACAAATACCACAGGAAGCAATGTTACTACATCATCTGCTCCTA
ATAGTAACTCCACATCTGGTTCTGCTACTAGCAACCCTTTTGCTTTAGGTGGCCTTGGAGGACTTGCAGGTCTGAGTAGC
TTGGGTTTAAATACTACCAACTTCTCTGAACTACAGAGCCAGATGCAGCGACAACTTTTGTCTAACCCTGAAATGATGGT
CCAGATCATGGAAAATCCCTTTGTTCAGAGCATGCTCTCAAATCCAGACCTGATGAGACAATTAATTATGGCCAATCCAC
AAATGCAGCAGTTGATACAGAGAAATCCAGAGATTAGTCATATGCTGAATAATCCAGATATAATGAGACAAACATTGGAA
CTTGCAAGGAATCCAGCAATGATGCAGGAAATGATGAGAAACCAGGACCGAGCCTTGAGCAACTTAGAAAGTATTCCAGG
GGGATATAATGCTTTAAGGCGCATGTACACAGATATTCAGGAACCAATGCTGAGTGCTGCGCAAGAGCAGTTTGGTGGTA
ATCCATTTGCTTCCTTGGTGAGCAATACATCTTCAGGTGAAGGTAGTCAACCTTCCCGTACAGAAAACAGAGATCCACTA
CCCAATCCATGGGCTCCACAGACTTCCCAGAGTTCATCAGCTTCCAGTGGCACTGTCAGCACTGTGGGTGGCACTACTGG
TAGTGCTGCCAGTGGCACTGCTGGGCAGAGTACTACTATGCCAAATTTGGTACCTGGAGTAGGAGCTAGTATGTTCAACA
CTCCAGGAATGCAGAGCTTGTTGCAACAAATAACTGAAAACCCACAACTTATGCAAAACATGTTGTCTGCCCCCTACATG
AGAAGCATGATGCAGTCACTAAGCCAGAATCCTGACCTTGCTGCACAGATGATGCTGAATAATCCCCTATTTGCTGGAAA
TCCTCAGCTTCAAGAACAAATGAGACAACAGCTCCCAACTTTCCTCCAACAAATGCAGAATCCTGATACACTATCAGCAA
TGTCAAACCCTAGAGCAATGCAGGCCTTGTTACAGATTCAGCAGGGTTTACAGACTTTAGCAACGGAAGCCCCGGGCCTT
ATTCCAGGGTTTACTCCTGGCTTGGGAGCATTAGGAGGCACTGGAAGCTCTTCAGGAACCAATGGCTCTAATGCTGCACC
TAGTGAAAACACAAGCCCCACAGCAGGAACCACTGAACCTGGACATCAGCAGTTTATTCAACAGATGCTACAGGCTCTTG
CTGGAGTAAATCCTCAGCTACAGAATCCAGAAGTCAGATTTCAGCAACAACTGGAACAGCTCAGTGCAATGGGATTTTTG
AACCGTGAAGCAAACTTGCAAGCTCTAATAGCAACAGGAGGTGATATCAATGCAGCTATTGAAAGGTTACTGGGCTCCCA
GCCATCATAG

Library Parental gene expression (RPM)
SRP051959_colon 51 .85 RPM
SRP051959_heart 40 .76 RPM
SRP051959_kidney 56 .02 RPM
SRP051959_liver 58 .94 RPM
SRP051959_lung 49 .50 RPM
SRP051959_lymph_node 49 .02 RPM
SRP051959_skeletal_muscle 50 .60 RPM
SRP051959_spleen 49 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014827 ortholog_one2one 2 retrogenes
retro_btau_1087, retro_btau_188,
Canis familiaris ENSCAFG00000001435 ortholog_one2one 1 retrogene
retro_cfam_236,
Cavia porcellus ENSCPOG00000004849 ortholog_one2one 1 retrogene
retro_cpor_113,
Dasypus novemcinctus ENSDNOG00000012687 ortholog_one2one 1 retrogene
retro_dnov_14,
Dipodomys ordii ENSDORG00000015266 ortholog_one2one 1 retrogene
retro_dord_680,
Equus caballus ENSECAG00000019110 ortholog_one2one 1 retrogene
retro_ecab_1063,
Echinops telfairi ENSETEG00000002822 ortholog_one2one 1 retrogene
retro_etel_39,
Felis catus ENSFCAG00000015049 ortholog_one2one 1 retrogene
retro_fcat_83,
Homo sapiens ENSG00000135018 ortholog_one2one 1 retrogene
retro_hsap_58,
Myotis lucifugus ENSMLUG00000002036 ortholog_one2many 2 retrogenes
retro_mluc_1774, retro_mluc_33,
Mustela putorius furo ENSMPUG00000002028 ortholog_one2one 1 retrogene
retro_mputfur_55,
Mus musculus ENSMUSG00000005312 ortholog_one2one 1 retrogene
retro_mmus_83,
Nomascus leucogenys ENSNLEG00000003306 ortholog_one2one 1 retrogene
retro_nleu_31,
Otolemur garnettii ENSOGAG00000012947 ortholog_one2one 1 retrogene
retro_ogar_276,
Pongo abelii ENSPPYG00000019323 ortholog_one2one 1 retrogene
retro_pabe_87,
Pan troglodytes ENSPTRG00000021055 ortholog_one2one 1 retrogene
retro_ptro_93,
Rattus norvegicus ENSRNOG00000019282 ortholog_one2one 1 retrogene
retro_rnor_339,
Ictidomys tridecemlineatus ENSSTOG00000013462 ortholog_one2one 1 retrogene
retro_itri_157,
Tursiops truncatus ENSTTRG00000004696 ortholog_one2one 1 retrogene
retro_ttru_1475,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3977 91.61 54.50
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2. retro_cjac_4067 79.55 83.02
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Download FASTA sequences of all ENSCJAG00000003609 retrocopies