Parental gene:

Ubqln1, ENSMUSG00000005312

Aliases:Ubqln1, 1110046H03Rik, 1810030E05Rik, AU019746, C77538, D13Ertd372e, Da41, Dsk2, Plic-1, Plic1, Xdrp1
Description:ubiquilin 1 [Source:MGI Symbol;Acc:MGI:1860276]
Organism:Mouse (Mus musculus)
Coordinates:13:58176155..58215653(-)


>ENSMUSG00000005312
ATGGCCGAGAGCGCAGAGAGCGGCGGCCCACCGGGCGCGCAGGACAGTGCGGCCGACGGCGGCCCCGCAGAGCCCAAGAT
CATGAAGGTCACGGTGAAGACGCCTAAAGAGAAGGAGGAGTTTGCCGTGCCCGAGAACAGCTCGGTCCAGCAGTTCAAAG
AGGAAATCTCTAAACGTTTCAAATCTCATATTGACCAACTTGTGTTGATATTTGCTGGAAAAATTTTAAAAGATCAAGAT
ACTCTGAGTCAGCATGGGATTCATGATGGACTTACGGTTCACCTTGTCATCAAAACACAGAACAGGCCGCAAGATAATTC
AGCTCAGCAAACAAATGCCCCTGGAAGCACTGTGACCAGCTCACCAGCTCCCGATAGCAACCCCACGTCTGGTTCTGCTG
CTAACAGCTCCTTTGGCGTAGGCGGACTTGGAGGACTTGCAGGTCTTAGCAGCTTGGGTTTAAACACCACCAACTTCTCT
GAACTCCAGAGCCAAATGCAGCGGCAACTTTTGTCTAACCCTGAAATGATGGTCCAGATCATGGAAAATCCCTTTGTCCA
GAGCATGCTCTCAAATCCTGACCTGATGCGGCAATTGATTATGGCCAATCCACAGATGCAACAGTTGATACAGAGAAATC
CAGAGATTAGTCATATGCTTAATAATCCAGATATAATGAGACAAACACTGGAACTTGCGAGAAATCCAGCGATGATGCAG
GAAATGATGAGAAACCAGGACCGAGCCTTGAGCAACCTAGAAAGTATTCCTGGGGGCTATAATGCCTTACGGCGCATGTA
CACCGATATCCAGGAGCCTATGCTGAATGCTGCTCAAGAACAGTTTGGTGGTAATCCATTTGCGTCCTTAGTGAGCAGTT
CGTCCTCAGCAGAAGGGACTCAGCCTTCTCGAACAGAAAATAGGGATCCGCTCCCCAACCCGTGGGCTCCGCAGACTTCC
CAGAGCTCACCAGCCTCCGGTACCACTGGCAGCACCACTAACACCATGAGCACCTCTGGTGGCACTGCCACCAGTACCCC
TGCTGGACAGAGCACCTCGGGCCCAAGCTTGGTGCCTGGCGCAGGAGCTAGTATGTTCAACACCCCCGGAATGCAGAGCC
TGCTGCAGCAGATAACTGAGAACCCACAGCTCATGCAGAACATGCTGTCCGCCCCATACATGAGGAGCATGCTGCAGTCC
CTGAGCCAGAACCCCGACCTTGCTGCGCAGATGATGCTGAATAATCCCCTATTTGCTGGAAATCCTCAGCTTCAAGAACA
AATGAGACAACAGCTCCCAACTTTCCTCCAACAAATGCAGAACCCCGACACGCTCTCAGCGATGTCGAATCCTAGAGCCA
TGCAGGCGCTGCTGCAGATCCAGCAGGGCTTGCAGACGCTGGCCACAGAAGCTCCTGGCCTCATCCCAGGGTTTACTCCT
GGCTTGGCAGCAGGCAATTCTGGAGGCTCTTCCGGAACCAATGCACCTAGCACTGCACCTAGTGAAGATACGAACCCCCA
AGGGGGCACTGCTGAGCCAGGCCACCAGCAGTTTATCCAGCAGATGCTGCAGGCCCTTGCGGGGGTGAATCCTCAGCTGC
AGAGTCCAGAAGTCAGATTTCAGCAACAACTGGAACAACTCAGTGCCATGGGATTCTTGAACCGTGAAGCAAACCTGCAA
GCTCTGATAGCCACAGGGGGCGACATCAATGCAGCAATCGAAAGGTTGCTGGGCTCCCAGCCGTCATAG

Library Parental gene expression (RPM)
SRP007412_brain 168 .33 RPM
SRP007412_cerebellum 186 .97 RPM
SRP007412_heart 60 .70 RPM
SRP007412_kidney 140 .12 RPM
SRP007412_liver 150 .20 RPM
SRP007412_testis 108 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014827 ortholog_one2one 2 retrogenes
retro_btau_1087, retro_btau_188,
Canis familiaris ENSCAFG00000001435 ortholog_one2one 1 retrogene
retro_cfam_236,
Callithrix jacchus ENSCJAG00000003609 ortholog_one2one 2 retrogenes
retro_cjac_3977, retro_cjac_4067,
Cavia porcellus ENSCPOG00000004849 ortholog_one2one 1 retrogene
retro_cpor_113,
Dasypus novemcinctus ENSDNOG00000012687 ortholog_one2one 1 retrogene
retro_dnov_14,
Dipodomys ordii ENSDORG00000015266 ortholog_one2one 1 retrogene
retro_dord_680,
Equus caballus ENSECAG00000019110 ortholog_one2one 1 retrogene
retro_ecab_1063,
Echinops telfairi ENSETEG00000002822 ortholog_one2one 1 retrogene
retro_etel_39,
Felis catus ENSFCAG00000015049 ortholog_one2one 1 retrogene
retro_fcat_83,
Homo sapiens ENSG00000135018 ortholog_one2one 1 retrogene
retro_hsap_58,
Myotis lucifugus ENSMLUG00000002036 ortholog_one2many 2 retrogenes
retro_mluc_1774, retro_mluc_33,
Mustela putorius furo ENSMPUG00000002028 ortholog_one2one 1 retrogene
retro_mputfur_55,
Nomascus leucogenys ENSNLEG00000003306 ortholog_one2one 1 retrogene
retro_nleu_31,
Otolemur garnettii ENSOGAG00000012947 ortholog_one2one 1 retrogene
retro_ogar_276,
Pongo abelii ENSPPYG00000019323 ortholog_one2one 1 retrogene
retro_pabe_87,
Pan troglodytes ENSPTRG00000021055 ortholog_one2one 1 retrogene
retro_ptro_93,
Rattus norvegicus ENSRNOG00000019282 ortholog_one2one 1 retrogene
retro_rnor_339,
Ictidomys tridecemlineatus ENSSTOG00000013462 ortholog_one2one 1 retrogene
retro_itri_157,
Tursiops truncatus ENSTTRG00000004696 ortholog_one2one 1 retrogene
retro_ttru_1475,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_83 73.71 66.67
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Download FASTA sequences of all ENSMUSG00000005312 retrocopies