Parental gene:

SBDS, ENSCJAG00000004283

Aliases:None
Description:Shwachman-Bodian-Diamond syndrome [Source:HGNC Symbol;Acc:19440]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:1641399..1648591(-)


>ENSCJAG00000004283
ATGTCGATCTTCACCCCCACCAACCAGATCCGCCTAACCAACGTGGCCGTGGTACGGATGAAGCGCGCCGGGAAGCGCTT
CGAAATCGCCTGCTACAAAAACAAGGTCGTCGGCTGGCGGAGCGGCGTGGAAAAAGACCTTGATGAAGTCCTGCAGACGC
ACTCAGTGTTTGTAAATGTTTCTAAAGGTCAGGTTGCAAAGAAGGAGGATCTCATCACTGCGTTTGGAACAGATGACCAA
ACTGAAATCTGTAAGCAGATTTTGACTAAAGGAGAGGTTCAAGTATCAGATAAAGAAAGACACACACAACTGGAGCAGAT
GTTTAGGGACATTGCAACTATCGTGGCAGACAAATGTGTGAATCCGGAAACAAAGAGACCATACACCGTGATCCTCATCG
AGAGGGCCATGAAGGACATTCACTACTCAGTGAAAACCAACAAGAGTACAAAACAGCAGGCGCTGGAAGTCATAAAGCAG
CTGAAAGAGAAAATGAAGATAGAGCGAGCTCACATGAGACTTCGGTTCATCCTTCCAGTGAATGAAGGCAAGAAGCTGAA
AGAAAAGCTCAAGCCGCTGATCAAGGTCATAGAAAGTGAAGACTATGGCCAACAGTTAGAAATCGTCTGTCTCATTGACC
CGGGTTGCTTCAGAGAAGTCGATGAGCTAATAAAAAAGGAAACCAAAGGCAAAGGTTCTTTGGAAGTGCTCAGTTTGAAA
GATGTGGAAGAAGGAGATGAGAAATTTGAATGA

Library Parental gene expression (RPM)
SRP051959_spleen 24 .68 RPM
SRP051959_skeletal_muscle 54 .64 RPM
SRP051959_lymph_node 18 .45 RPM
SRP051959_lung 37 .71 RPM
SRP051959_liver 25 .93 RPM
SRP051959_kidney 29 .60 RPM
SRP051959_heart 29 .85 RPM
SRP051959_colon 26 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000003795 ortholog_one2one 2 retrogenes
retro_chof_1999, retro_chof_623,
Dasypus novemcinctus ENSDNOG00000016904 ortholog_one2one 1 retrogene
retro_dnov_748,
Loxodonta africana ENSLAFG00000008763 ortholog_one2one 1 retrogene
retro_lafr_920,
Monodelphis domestica ENSMODG00000006644 ortholog_one2one 1 retrogene
retro_mdom_2004,
Mus musculus ENSMUSG00000025337 ortholog_one2one 1 retrogene
retro_mmus_950,
Otolemur garnettii ENSOGAG00000009011 ortholog_one2many 1 retrogene
retro_ogar_3368,
Ochotona princeps ENSOPRG00000008721 ortholog_one2one 6 retrogenes
retro_opri_1179, retro_opri_154, retro_opri_363, retro_opri_484, retro_opri_698, retro_opri_957,
Rattus norvegicus ENSRNOG00000000888 ortholog_one2many 1 retrogene
retro_rnor_686,
Ictidomys tridecemlineatus ENSSTOG00000022203 ortholog_one2one 1 retrogene
retro_itri_1763,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3984 91.43 84.00
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Download FASTA sequences of all ENSCJAG00000004283 retrocopies