Parental gene:

SBDS, ENSDNOG00000016904

Aliases:None
Description:Shwachman-Bodian-Diamond syndrome [Source:HGNC Symbol;Acc:19440]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2677:3017..7458(-)


>ENSDNOG00000016904
ATGTCGATCTTCACCCCAACGAACCAGATCCGTCTAACTAATGTGGCGGTAGTACGGATGAAGCGCGCCGGGAAGCGCTT
CGAAATCGCCTGCTACAAAAATAAGGTCGTCGGATGGCGGAGCGGCGTGGAAAAAGACCTTGATGAAGTTCTGCAGACCC
ACTCAGTGTTTGTAAATGTTTCTAAAGGTCAGGTTGCAAAGAAGGAAGATCTCGTCAGCGCATTTGGAACAGATGACCAA
ACTGAAATCTGTAAGCAGATTTTGACTAAAGGAGAAGTTCAAGTATCAGATAAAGAACGGCACACACAGCTGGAGCAGAT
GTTTAGAGACATTGCAACAATTGTAGCAGACAAATGTGTGAATCCTGAAACAAAGAGACCATACACTGTTATCCTTATCG
AGAGAGCCATGAAAGACATCCACTATTCGGTTAAAACCAACAAGAGTACAAAACAGCAGGCATTGGAAGTGATAAAACAG
TTAAAAGAGAAAATGAAGATAGAACGTGCTCACATGAGACTTCGGTTCATTCTTCCATTGAACGAAGGGAAGAAGCTGAA
AGAAAAGCTCAAGCCATTGATCAAGGTTATAGAAAGTGAAGACTATAGTCAACAGTTGGAAATTGTGTGTCTTATTGACC
CAGGCTGCTTCAGAGAAATTGATGAGCTAATTAAAAAGGAGACAAAAGGCAAAGGTTCTTTGGAAGTACTCAATTTAAAA
GATGTCGAAGAAGGAGATGAGAAATTTGAATGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 104 .04 RPM
SRP012922_cerebellum 84 .54 RPM
SRP012922_heart 44 .78 RPM
SRP012922_kidney 127 .59 RPM
SRP012922_liver 73 .07 RPM
SRP012922_lung 100 .80 RPM
SRP012922_quadricep_muscle 89 .14 RPM
SRP012922_spleen 74 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000003795 ortholog_one2one 2 retrogenes
retro_chof_1999, retro_chof_623,
Callithrix jacchus ENSCJAG00000004283 ortholog_one2one 1 retrogene
retro_cjac_3984,
Loxodonta africana ENSLAFG00000008763 ortholog_one2one 1 retrogene
retro_lafr_920,
Monodelphis domestica ENSMODG00000006644 ortholog_one2one 1 retrogene
retro_mdom_2004,
Mus musculus ENSMUSG00000025337 ortholog_one2one 1 retrogene
retro_mmus_950,
Otolemur garnettii ENSOGAG00000009011 ortholog_one2many 1 retrogene
retro_ogar_3368,
Ochotona princeps ENSOPRG00000008721 ortholog_one2one 6 retrogenes
retro_opri_1179, retro_opri_154, retro_opri_363, retro_opri_484, retro_opri_698, retro_opri_957,
Rattus norvegicus ENSRNOG00000000888 ortholog_one2many 1 retrogene
retro_rnor_686,
Ictidomys tridecemlineatus ENSSTOG00000022203 ortholog_one2one 1 retrogene
retro_itri_1763,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_748 87.70 74.80
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Download FASTA sequences of all ENSDNOG00000016904 retrocopies