Parental gene:

RBX1, ENSCJAG00000004763

Aliases:None
Description:ring-box 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:9928]
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:201660051..201676808(+)


>ENSCJAG00000004763
ATGGCGGCAGCGATGGATGTGGATACCCCGAGCGGCACCAACAGCGGCGCGGGCAAGAAGCGCTTTGAAGTGAAAAAGTG
GAATGCAGTAGCCCTCTGGGCCTGGGATATTGTGGTTGATAACTGTGCCATCTGCAGGAACCACATTATGGATCTTTGCA
TAGAATGTCAAGCTAACCAGGCGTCCGCTACTTCAGAAGAGTGTACCGTTGCATGGGGAGTCTGTAACCATGCTTTTCAC
TTCCACTGCATCTCTCGCTGGCTCAAAACACGACAGGTGTGTCCGTTGGACAACAGAGAGTGGGAATTCCAAAAAAAATA
CACAAAG

Library Parental gene expression (RPM)
SRP051959_colon 7 .61 RPM
SRP051959_heart 11 .51 RPM
SRP051959_kidney 12 .22 RPM
SRP051959_liver 8 .47 RPM
SRP051959_lung 10 .09 RPM
SRP051959_lymph_node 11 .03 RPM
SRP051959_skeletal_muscle 10 .37 RPM
SRP051959_spleen 13 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000030225 ortholog_one2many 2 retrogenes
retro_btau_1415, retro_btau_61,
Callithrix jacchus ENSCJAG00000001991 within_species_paralog 2 retrogenes
retro_cjac_1391, retro_cjac_3943,
Dasypus novemcinctus ENSDNOG00000007595 ortholog_one2one 1 retrogene
retro_dnov_433,
Homo sapiens ENSG00000100387 ortholog_one2one 1 retrogene
retro_hsap_2118,
Loxodonta africana ENSLAFG00000008795 ortholog_one2one 1 retrogene
retro_lafr_943,
Microcebus murinus ENSMICG00000008019 ortholog_one2one 1 retrogene
retro_mmur_750,
Myotis lucifugus ENSMLUG00000007815 ortholog_one2many 4 retrogenes
retro_mluc_1259, retro_mluc_1712, retro_mluc_20, retro_mluc_244,
Macaca mulatta ENSMMUG00000012642 ortholog_one2one 3 retrogenes
retro_mmul_702, retro_mmul_974, retro_mmul_996,
Monodelphis domestica ENSMODG00000013054 ortholog_one2one 1 retrogene
retro_mdom_626,
Mus musculus ENSMUSG00000022400 ortholog_one2one 1 retrogene
retro_mmus_1633,
Nomascus leucogenys ENSNLEG00000015436 ortholog_one2one 1 retrogene
retro_nleu_1956,
Ochotona princeps ENSOPRG00000006728 ortholog_one2one 2 retrogenes
retro_opri_410, retro_opri_649,
Pongo abelii ENSPPYG00000011861 ortholog_one2one 2 retrogenes
retro_pabe_1986, retro_pabe_1987,
Pan troglodytes ENSPTRG00000014417 ortholog_one2one 1 retrogene
retro_ptro_1550,
Rattus norvegicus ENSRNOG00000019214 ortholog_one2one 2 retrogenes
retro_rnor_1890, retro_rnor_2724,
Ictidomys tridecemlineatus ENSSTOG00000015580 ortholog_one2many 1 retrogene
retro_itri_888,
Tupaia belangeri ENSTBEG00000009043 ortholog_one2one 4 retrogenes
retro_tbel_1175, retro_tbel_3306, retro_tbel_3756, retro_tbel_3805,
Tursiops truncatus ENSTTRG00000012018 ortholog_one2one 2 retrogenes
retro_ttru_1419, retro_ttru_583,
Vicugna pacos ENSVPAG00000004894 ortholog_one2one 2 retrogenes
retro_vpac_207, retro_vpac_502,
Drosophila melanogaster FBgn0025638 ortholog_one2many 1 retrogene
retro_dmel_55,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1267 70.91 100.00
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2. retro_cjac_1955 78.65 80.56
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3. retro_cjac_1962 89.81 100.00
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Download FASTA sequences of all ENSCJAG00000004763 retrocopies