RetrogeneDB ID: | retro_mmul_996 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 13:83115609..83115885(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RBX1 | ||
| Ensembl ID: | ENSMMUG00000012642 | ||
| Aliases: | None | ||
| Description: | ring-box 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:9928] |
Retrocopy-Parental alignment summary:
>retro_mmul_996
ATAGTGGCAGTGATGAAAGAGGATACCCTGAGCAGCACCAATGACAGTGTGGGCAAAAATGGCTTTAAAGTGAAAAAGTG
GAATGCAGTAGCCCTCTGGGCCTGGGATATTGTGCTTGGTAACTGTGCCATCTGCAGGAACCACATTATAGATCTTTGCA
CAGAATGCCAAGCTAACCAATTGTCTGCTACTTCTGAAGAGTATACCATCTCATGGGGCGTTTGTAACCATGCTTTTCAC
TTCCACTGCATCTCTCCCTGGCTCAAAACACCACAG
ORF - retro_mmul_996 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 69.57 % |
| Parental protein coverage: | 87.62 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCGGCRNHQKAYCIECQANQASATSEECTV |
| ..A.M..DT.S.TN...GK..F.VKKWNAVALWAWDIV..NC..CRNH....C.ECQANQ.SATSEE.T. | |
| Retrocopy | IVAVMKEDTLSSTNDSVGKNGFKVKKWNAVALWAWDIVLGNCAICRNHIIDLCTECQANQLSATSEEYTI |
| Parental | AWGVCNHAFHFHCISRWLKTRQ |
| .WGVCNHAFHFHCIS.WLKT.Q | |
| Retrocopy | SWGVCNHAFHFHCISPWLKTPQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 8 .96 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .26 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 12 .72 RPM |
| SRP007412_heart | 0 .00 RPM | 10 .13 RPM |
| SRP007412_kidney | 0 .00 RPM | 12 .56 RPM |
| SRP007412_liver | 0 .00 RPM | 7 .01 RPM |
| SRP007412_testis | 0 .00 RPM | 12 .36 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_996 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_996 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_996 has 3 orthologous retrocopies within eutheria group .| Species | RetrogeneDB ID |
|---|---|
| Homo sapiens | retro_hsap_2118 |
| Pan troglodytes | retro_ptro_1550 |
| Callithrix jacchus | retro_cjac_1267 |