Parental gene:

CNN1, ENSCJAG00000005530

Aliases:None
Description:calponin 1, basic, smooth muscle [Source:HGNC Symbol;Acc:2155]
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:10981439..10992575(+)


>ENSCJAG00000005530
ATGTCCTCTGCTCACTTCAACCGAGGCCCTGCCTATGGGCTGTCAGCTGAGGTTAAGAACAAGCTGGCCCAGAAGTACGA
CCATCAGCGGGAGCAGGAGCTGAGAGAGTGGATCGAGGGGGTGACGGGCCGTCGCATCGGCAACAACTTCATGGACGGCC
TCAAAGATGGCATTATTCTCTGCGAATTCATCAATAAGCTTCAGCCAGGCTCTGTGAAGAAGATCAATGAATCAACCCAA
AACTGGCACCAGCTGGAGAACATTGGCAACTTCATCAAGGCCATCACCAAGTATGGGGTGAAGCCCCATGACATCTTTGA
GGCCAATGACCTGTTTGAGAACACCAACCATACACAGGTGCAGTCCACCCTCCTGGCCCTGGCCAGCATGGCCAAGACGA
AAGGAAACAAAGTGAATGTGGGGGTGAAGTATGCAGAGAAGCAGGAGCGGAAATTTGAGCCAGAGAAGCTAAGAGAAGGA
CGGAACATCATCGGGCTGCAGATGGGCACCAACAAGTTTGCCAGCCAGCAGGGCATGACGGCCTACGGTACCCGGCGCCA
CCTCTACGACCCCAAGCTGGGCACAGACCAGCCTCTGGACCAGGCGACCATCAGCCTGCAGATGGGCACCAACAAAGGAG
CCAGCCAGGCCGGCATGACCGCACCAGGGACCAAGCGGCAGATCTTTGAGCCAGGGCTGGGCATGGAGCACTGCGACACG
CTGAATGTCAGCCTGCAGATGGGCAGCAACAAGGGCGCCTCGCAGCGGGGCATGACAGTGTATGGGCTGCCTCGCCAGGT
CTACGACCCCAAGTACTGCCTGACGCCCGAGTACCCTGAGCTGGGGGAGCCTGCCCACAACCACCACACACACAACTACT
ACAATTCCGCCTAG

Library Parental gene expression (RPM)
SRP051959_spleen 1 .66 RPM
SRP051959_skeletal_muscle 2 .75 RPM
SRP051959_lymph_node 0 .84 RPM
SRP051959_lung 6 .85 RPM
SRP051959_liver 0 .11 RPM
SRP051959_kidney 2 .15 RPM
SRP051959_heart 67 .49 RPM
SRP051959_colon 66 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000062 ortholog_one2one 1 retrogene
retro_amel_675,
Callithrix jacchus ENSCJAG00000006156 within_species_paralog 2 retrogenes
retro_cjac_2035, retro_cjac_2444,
Callithrix jacchus ENSCJAG00000012755 within_species_paralog 2 retrogenes
retro_cjac_723, retro_cjac_778,
Callithrix jacchus ENSCJAG00000018128 within_species_paralog 3 retrogenes
retro_cjac_1331, retro_cjac_533, retro_cjac_861,
Tursiops truncatus ENSTTRG00000001803 ortholog_one2one 1 retrogene
retro_ttru_1792,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_681 60.95 91.92
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Download FASTA sequences of all ENSCJAG00000005530 retrocopies