Parental gene: | TAGLN, ENSCJAG00000012755 |
| Aliases: | LOC100385619, TAGLN, transgelin |
| Description: | transgelin [Source:HGNC Symbol;Acc:11553] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 11:14785195..14790971(+) |
>ENSCJAG00000012755
ATGGCCAACAAGGGTCCTTCCTATGGCATGAGCCGAGAAGTGCAGTCCAAAATCGAGAAGAAATACGATGAGGAGCTGGA
GGAGCGGCTGGTGGAATGGATTATAGTGCAGTGTGGCCCTGATGTGGGCCGCCCAGACCGTGGGCGCCTGGGCTTCCAGG
TCTGGCTGAAGAACGGCGTGATTCTGAGCAAGCTGGTGAATAGCCTGTACCCTGATGGCTCCAAGCCAGTGAAGGTGCCT
GAGAACCCGCCCTCCATGGTCTTCAAGCAGATGGAGCAGGTGGCCCAGTTCCTGAAGGCAGCTGAGGACTATGGGGTCAC
CAAGACTGACATGTTCCAGACTGTTGACCTCTTTGAAGGCAAAGACATGGCAGCAGTGCAGAGGACCCTGATGGCTTTGG
GCAGCTTGGCAGTGACCAAGAATGATGGGCACTACCGTGGAGATCCCAACTGGTTTATGAAGAAAGCGCAGGAGCATAAG
AGAGAATTCACAGAGAGCCAGCTGCAGGAGGGAAAGCATGTCATTGGCCTTCAGATGGGCAGCAACAGAGGGGCCTCCCA
GGCCGGCATGACGGGCTACGGACGACCTCGGCAGATCATCAGTTAG
ATGGCCAACAAGGGTCCTTCCTATGGCATGAGCCGAGAAGTGCAGTCCAAAATCGAGAAGAAATACGATGAGGAGCTGGA
GGAGCGGCTGGTGGAATGGATTATAGTGCAGTGTGGCCCTGATGTGGGCCGCCCAGACCGTGGGCGCCTGGGCTTCCAGG
TCTGGCTGAAGAACGGCGTGATTCTGAGCAAGCTGGTGAATAGCCTGTACCCTGATGGCTCCAAGCCAGTGAAGGTGCCT
GAGAACCCGCCCTCCATGGTCTTCAAGCAGATGGAGCAGGTGGCCCAGTTCCTGAAGGCAGCTGAGGACTATGGGGTCAC
CAAGACTGACATGTTCCAGACTGTTGACCTCTTTGAAGGCAAAGACATGGCAGCAGTGCAGAGGACCCTGATGGCTTTGG
GCAGCTTGGCAGTGACCAAGAATGATGGGCACTACCGTGGAGATCCCAACTGGTTTATGAAGAAAGCGCAGGAGCATAAG
AGAGAATTCACAGAGAGCCAGCTGCAGGAGGGAAAGCATGTCATTGGCCTTCAGATGGGCAGCAACAGAGGGGCCTCCCA
GGCCGGCATGACGGGCTACGGACGACCTCGGCAGATCATCAGTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 29 .50 RPM |
| SRP051959_skeletal_muscle | 24 .79 RPM |
| SRP051959_lymph_node | 22 .15 RPM |
| SRP051959_lung | 44 .44 RPM |
| SRP051959_liver | 5 .65 RPM |
| SRP051959_kidney | 30 .53 RPM |
| SRP051959_heart | 344 .51 RPM |
| SRP051959_colon | 207 .63 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000005530 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000006156 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000018128 | within_species_paralog | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000002371 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000011970 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_723 | 87.00 | 99.50 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_778 | 95.52 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000012755 retrocopies