RetrogeneDB ID: | retro_cjac_2035 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 21:46660286..46660878(+) | ||
Located in intron of: | ENSCJAG00000015729 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000015777 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAGLN2 | ||
Ensembl ID: | ENSCJAG00000006156 | ||
Aliases: | None | ||
Description: | transgelin 2 [Source:HGNC Symbol;Acc:11554] |
Percent Identity: | 88. % |
Parental protein coverage: | 90. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LALALVSSPQPPPPIGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQN |
L...L..SPQP.PP.GMANRGPAYGLSREVQQ.IEKQ.DADLEQILIQWITTQC.KDVGRPQPG.ENFQN | |
Retrocopy | LSSPLERSPQPLPPTGMANRGPAYGLSREVQQNIEKQHDADLEQILIQWITTQCPKDVGRPQPGWENFQN |
Parental | WLKDGTVLCELINALY-PEGQAPVKKIQASAMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMA |
WLKDGTVLCELINAL..PEGQAPVKKIQAS.MAFKQ.EQ.SQFLQAAE..GI.T.DIFQTVDLWEGKNMA | |
Retrocopy | WLKDGTVLCELINALH<PEGQAPVKKIQASTMAFKQTEQRSQFLQAAEGCGISTADIFQTVDLWEGKNMA |
Parental | CVQRTLMNLGG-LAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGRNVIGLQMGTNR |
CVQ.TLMNLGG.LAVA.DDGLFSGDPNWFPKKSKENPRNFSDNQLQEGRNVI.LQMGTNR | |
Retrocopy | CVQQTLMNLGG<LAVAQDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGRNVIRLQMGTNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 1 .29 RPM | 62 .35 RPM |
SRP051959_heart | 0 .05 RPM | 31 .41 RPM |
SRP051959_kidney | 0 .22 RPM | 21 .17 RPM |
SRP051959_liver | 0 .02 RPM | 10 .96 RPM |
SRP051959_lung | 0 .23 RPM | 86 .17 RPM |
SRP051959_lymph_node | 0 .02 RPM | 34 .09 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 15 .09 RPM |
SRP051959_spleen | 0 .08 RPM | 32 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002068 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005530 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006156 | 2 retrocopies |
retro_cjac_2035 , retro_cjac_2444,
|
Callithrix jacchus | ENSCJAG00000012755 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000018128 | 3 retrocopies | |
Homo sapiens | ENSG00000158710 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006573 | 9 retrocopies | |
Myotis lucifugus | ENSMLUG00000026228 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004705 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010032 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013350 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000648 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001533 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006395 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000001645 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001814 | 1 retrocopy |