Parental gene:

CASP3, ENSCJAG00000005740

Aliases:None
Description:caspase 3, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1504]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:4776485..4797547(+)


>ENSCJAG00000005740
ATGGAGAACACTGAAAACTCAGTGGATTCAAAATCCATTAAAAATTCGGAACGAAAGATCATACATGGAAGCAAATCAGT
GGACTCTGGTATATCCCTGGACAGCAGTTATAAAATGGATTATCCTGAAATGGGTTTATGTCTAATAATTAATAATAAGA
ACTTTCATAAAAGCACTGGAATGGCATCTCGGTCTGGTACAGATGTGGATGCAGCAAACCTCAGGGAAACTTTCATGAAC
TTGAAATATGAAGTCAGGAATAAAAACGATCTCACACGCGAAGAGATTGTGGAACTGATGCGTAATGTTTCTAAAGAAGA
TCACAGCAAAAGGAGCAGTTTCGTTTGTGTGCTTCTGAGCCATGGTGAAGAAGGAATAATTTTTGGAACCAATGGACCTG
TTGACCTGAAAAAAATAACAAGCTTTTTCAGAGGGGATTGTTGTAGAAGTCTAACTGGAAAACCCAAACTTTTCATTATT
CAGGCCTGCCGTGGCACAGAACTGGACTGTGGCATTGAGACGGACAGCGGTGTTGATGATGACATGGCGTGTCATAAAAT
ACCAGTGGAGGCCGACTTCTTGTATGCATACTCCACAGCACCTGGTTATTATTCCTGGCGAAATTCAAGGGACGGCTCCT
GGTTCATCCAGTCGCTTTGTGCCATGCTGAAGCTGTATGCCAACAAGCTTGAGTTCATGCATATCCTGACCCGGGTTAAC
CGAAAGGTGGCAACAGAATTTGAGTCCTCTTCCTTTGATGCTACTTTTCATGCAAAGAAACAGATTCCATGTATTGTTTC
CATGCTCACGAAAGAACTGTATTTTTATCAGTAA

Library Parental gene expression (RPM)
SRP051959_colon 14 .20 RPM
SRP051959_heart 9 .45 RPM
SRP051959_kidney 10 .69 RPM
SRP051959_liver 10 .09 RPM
SRP051959_lung 25 .91 RPM
SRP051959_lymph_node 48 .99 RPM
SRP051959_skeletal_muscle 9 .67 RPM
SRP051959_spleen 19 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000013931 ortholog_one2many 1 retrogene
retro_dnov_1013,
Dipodomys ordii ENSDORG00000002554 ortholog_one2one 2 retrogenes
retro_dord_178, retro_dord_620,
Homo sapiens ENSG00000164305 ortholog_one2one 1 retrogene
retro_hsap_406,
Gorilla gorilla ENSGGOG00000025155 ortholog_one2one 1 retrogene
retro_ggor_402,
Macaca mulatta ENSMMUG00000012053 ortholog_one2one 1 retrogene
retro_mmul_114,
Nomascus leucogenys ENSNLEG00000010895 ortholog_one2one 1 retrogene
retro_nleu_1005,
Pongo abelii ENSPPYG00000015236 ortholog_one2one 1 retrogene
retro_pabe_312,
Pan troglodytes ENSPTRG00000016640 ortholog_one2one 1 retrogene
retro_ptro_310,
Rattus norvegicus ENSRNOG00000010475 ortholog_one2many 1 retrogene
retro_rnor_2747,
Sarcophilus harrisii ENSSHAG00000009178 ortholog_one2many 1 retrogene
retro_shar_404,
Ictidomys tridecemlineatus ENSSTOG00000003865 possible_ortholog 2 retrogenes
retro_itri_172, retro_itri_586,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2678 80.58 99.64
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2. retro_cjac_3011 79.05 53.43
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Download FASTA sequences of all ENSCJAG00000005740 retrocopies