Parental gene:

HSPA5, ENSCJAG00000006880

Aliases:None
Description:heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:HGNC Symbol;Acc:5238]
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:169057755..169063254(-)


>ENSCJAG00000006880
AAGATGAAGCTCTTCCTGGTGGCCGCGATGCTGCTGCTGCTCGGCACGGCGCGGGCCGAGGAGGAGGACAAGAAGGAGGA
CGTGGGCACGGTGGTAGGCATCGACCTGGGGACCACCTACTCCTGCGTCGGCGTGTTCAAGAACGGCCGCGTGGAGATCA
TCGCTAACGATCAGGGTAACCGCATCACACCGTCCTATGTGGCCTTCACTCCTGAAGGGGAACGTCTGATCGGCGATGCC
GCCAAGAATCAGCTCACCTCCAATCCCGAGAACACGGTCTTTGACGCCAAGCGGCTTATCGGCCGCACCTGGAACGACCC
GTCTGTGCAACAGGACATCAAATTCTTGCCGTTCAAGGTGGTTGAAAAGAAAACTAAACCATACATTCAAGTCGATATTG
GAGGTGGGCAAACAAAGACATTTGCTCCGGAAGAAATTTCTGCCATGGTTCTCACTAAAATGAAAGAAACTGCTGAGGCT
TATTTGGGAAAGAAGGTTACCCATGCAGTTGTTACCGTACCAGCCTATTTCAATGATGCCCAACGCCAAGCTACCAAAGA
TGCTGGAACTATTGCCGGGCTAAATGTTATGAGGATCATCAATGAGCCTACGGCAGCTGCTATTGCTTATGGCCTGGATA
AGAGGGAGGGGGAGAAGAACATCCTGGTGTTTGACCTGGGTGGCGGAACCTTCGATGTATCTCTTCTCACCATTGACAAT
GGCGTCTTTGAAGTCGTGGCCACTAATGGAGATACTCATCTGGGTGGAGAAGACTTTGACCAGCGTGTCATGGAACACTT
CATCAAGCTATACAAAAAGAAGACTGGCAAAGACGTCAGGAAAGACAACAGAGCTGTGCAGAAACTCCGGCGTGAGGTAG
AAAAAGCCAAACGGGCCCTGTCTTCTCAACATCAAGCAAGAATTGAAATTGAGTCCTTCTATGAAGGAGAGGACTTTTCC
GAGACCCTGACTCGGGCCAAATTTGAAGAGCTAAACATGGATCTGTTCCGGTCTACTATGAAGCCTGTCCAGAAAGTGTT
GGAAGATTCTGATTTGAAGAAGTCTGATATTGATGAAATTGTTCTTGTTGGTGGCTCTACTCGAATTCCAAAGATTCAGC
AACTGGTTAAAGAGTTCTTCAATGGCAAGGAACCATCCCGTGGCATAAACCCAGATGAGGCTGTTGCATATGGTGCTGCT
GTCCAGGCTGGTGTGCTCTCTGGTGATCAAGATACAGGTGACCTGGTACTGCTTGATGTATGTCCCCTTACACTTGGTAT
TGAAACTGTGGGAGGTGTCATGACCAAACTGATTCCAAGGAACACAGTGGTGCCCACCAAGAAGTCTCAGATCTTTTCTA
CAGCTTCTGATAATCAACCCACTGTTACAATCAAGGTCTATGAAGGTGAAAGACCCCTGACAAAAGACAATCATCTTCTG
GGTACATTTGATCTGACTGGAATTCCTCCTGCTCCTCGTGGGGTCCCACAGATTGAAGTCACCTTTGAGATAGATGTGAA
TGGTATTCTTCGAGTGACAGCTGAAGACAAGGGTACAGGGAACAAAAATAAGATCACAATTACCAATGATCAGAATCGCC
TGACACCTGAAGAAATCGAAAGGATGGTTAATGATGCTGAGAAGTTTGCCGAGGAAGATAAAAAGCTCAAGGAGCGCATT
GATACTCGAAATGAGTTGGAAAGTTATGCCTATTCTCTAAAGAATCAGATTGGAGATAAAGAAAAGCTAGGAGGTAAACT
TTCCTCTGAAGATAAAGAGACCATGGAAAAAGCTGTAGAAGAAAAGATTGAATGGCTGGAAAGCCACCAAGATGCTGACA
TTGAAGACTTCAAAGCTAAGAAGAAGGAACTGGAAGAAGTTGTTCAGCCAATTATCAGCAAACTCTATGGCAGTGCAGGC
CCTCCTCCAACTGGTGAAGAGGATACAGCAGAAAAGGATGAGTTGTAG

Library Parental gene expression (RPM)
SRP051959_spleen 254 .43 RPM
SRP051959_skeletal_muscle 111 .16 RPM
SRP051959_lymph_node 134 .56 RPM
SRP051959_lung 115 .73 RPM
SRP051959_liver 342 .76 RPM
SRP051959_kidney 120 .07 RPM
SRP051959_heart 97 .58 RPM
SRP051959_colon 243 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007648 within_species_paralog 5 retrogenes
retro_cjac_2388, retro_cjac_3306, retro_cjac_3898, retro_cjac_4057, retro_cjac_721,
Homo sapiens ENSG00000044574 ortholog_one2one 1 retrogene
retro_hsap_3005,
Gallus gallus ENSGALG00000001000 ortholog_one2one 1 retrogene
retro_ggal_21,
Gorilla gorilla ENSGGOG00000026879 ortholog_one2one 1 retrogene
retro_ggor_2082,
Macropus eugenii ENSMEUG00000016702 ortholog_one2one 1 retrogene
retro_meug_522,
Mus musculus ENSMUSG00000026864 ortholog_one2one 1 retrogene
retro_mmus_1299,
Nomascus leucogenys ENSNLEG00000017348 ortholog_one2one 1 retrogene
retro_nleu_751,
Otolemur garnettii ENSOGAG00000006786 ortholog_one2one 1 retrogene
retro_ogar_2901,
Pongo abelii ENSPPYG00000019609 ortholog_one2one 1 retrogene
retro_pabe_2491,
Pan troglodytes ENSPTRG00000000563 ortholog_one2one 1 retrogene
retro_ptro_2033,
Ictidomys tridecemlineatus ENSSTOG00000011243 ortholog_one2one 4 retrogenes
retro_itri_1686, retro_itri_1687, retro_itri_1689, retro_itri_1879,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2221 77.13 61.83
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Download FASTA sequences of all ENSCJAG00000006880 retrocopies