RetrogeneDB - Parental gene ENSCJAG00000007648 details

							
>ENSCJAG00000007648
AGCCGGCAGGACAGAAATGTAGGGTCAACCATGTCGAAGGGACCTGCCGTTGGTATTGATCTTGGCACCACCTACTCCTG

TGTGGGTGTTTTCCAGCACGGAAAAGTAGAAATAATTGCCAATGATCAAGGAAACCGAACCACTCCAAGCTATGTCGCCT

TTACGGACACTGAACGATTGATCGGTGATGCCGCAAAGAATCAAGTTGCAATGAACCCCACCAACACGGTTTTTGATGCC

AAACGTCTGATTGGACGCAGATTTGATGATGCCGTTGTCCAGTCTGATATGAAGCATTGGCCCTTTATGGTGGTGAATGA

TGCTGGCAGGCCCAAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGCTTCTATCCAGAGGAGGTATCCTCTATGGTTC

TGACAAAGATGAAGGAAATTGCAGAAGCCTACCTTGGGAAGACTGTTACCAATGCTGTGGTCACAGTGCCCGCTTACTTT

AATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATTATTAATGAGCCAAC

TGCTGCTGCTATTGCTTATGGCTTAGACAAAAAGGTTGGAGCTGAGAGAAACGTGCTGATCTTTGATCTCGGAGGTGGCA

CTTTTGATGTGTCAATCCTCACTATTGAGGATGGAATCTTTGAGGTCAAGTCTACAGCCGGAGACACCCACTTGGGTGGA

GAAGATTTTGATAACCGAATGGTCAACCATTTCATTGCTGAGTTCAAGCGCAAGCATAAGAAGGACATAAGTGAGAACAA

GAGAGCTGTAAGACGCCTCCGTACTGCTTGTGAGCGTGCTAAGCGTACTCTCTCTTCCAGCACCCAGGCTAGTATTGAGA

TCGATTCCCTATATGAGGGAATCGACTTCTATACCTCCATTACCCGTGCCCGATTTGAAGAATTGAATGCTGACTTGTTC

CGTGGAACCCTGGACCCCGTAGAGAAGGCCCTTCGAGATGCCAAACTAGACAAGTCTCAAATTCATGATATTGTCCTGGT

TGGTGGTTCTACTCGCATCCCCAAAATTCAGAAGCTTCTCCAAGACTTTTTCAATGGAAAAGAACTGAATAAGAGCATCA

ACCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCCGCCATTCTGTCTGGAGATAAGTCTGAAAATGTTCAAGAT

TTGCTGCTCTTGGATGTCACTCCTCTTTCCCTTGGCATTGAAACTGCTGGTGGAGTCATGACCGTCCTCATCAAGCGTAA

TACTACCATTCCCACCAAGCAGACACAGACCTTCACTACCTATTCCGACAACCAGCCTGGTGTGCTTATTCAGGTTTATG

AAGGTGAGCGTGCCATGACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTTACAGGCATACCTCCTGCACCCCGAGGT

GTTCCTCAGATTGAGGTCACTTTTGACATTGATGCCAATGGCATTCTCAATGTGTCTGCTGTGGACAAGAGTACAGGAAA

AGAGAACAAGATTACTATCACTAATGACAAGGGCCGTTTGAGCAAGGAAGACATTGAACGTATGGTCCAGGAAGCTGAGA

AGTACAAAGCTGAAGATGAGAAGCAGAGGGACAAAGTGTCATCTAAGAATTCGCTTGAATCCTATGCATTCAACATGAAA

GCAACTGTTGAAGATGAGAAACTTCAAGGCAAGATTAACGATGAGGATAAACAGAAGATTCTGGACAAGTGTAATGAAAT

TATCAACTGGCTTGTTAAGAATCAGACTGCCGAGAAGGAAGAATTTGAACATCAGCAAAAAGAGCTGGAGAAAGTCTGCA

ACCCCATCATCACCAAGCTGTACCAGAGTGCAGGAGGCATGCCAGGAGGAATGCCTGGAGGATTCCCTGGTGGTGGAGCT

CCTCCCTCTGGTGGTGCTTCCTCAGGGCCCACTATTGAAGAGGTTGATTAA

Library	Parental gene expression (RPM)
SRP051959_spleen	368 .89 RPM
SRP051959_skeletal_muscle	227 .20 RPM
SRP051959_lymph_node	414 .60 RPM
SRP051959_lung	320 .55 RPM
SRP051959_liver	456 .22 RPM
SRP051959_kidney	314 .33 RPM
SRP051959_heart	200 .64 RPM
SRP051959_colon	328 .33 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000004884	ortholog_one2one	2 retrogenes	retro_acar_21, retro_acar_6,
Ailuropoda melanoleuca	ENSAMEG00000008425	ortholog_one2one	1 retrogene	retro_amel_126,
Anas platyrhynchos	ENSAPLG00000010667	ortholog_one2one	1 retrogene	retro_apla_6,
Bos taurus	ENSBTAG00000013162	ortholog_one2one	1 retrogene	retro_btau_354,
Canis familiaris	ENSCAFG00000011666	possible_ortholog	3 retrogenes	retro_cfam_140, retro_cfam_191, retro_cfam_509,
Ciona intestinalis	ENSCING00000009665	ortholog_one2many	1 retrogene	retro_cint_12,
Callithrix jacchus	ENSCJAG00000006880	within_species_paralog	1 retrogene	retro_cjac_2221,
Cavia porcellus	ENSCPOG00000004169	possible_ortholog	3 retrogenes	retro_cpor_1072, retro_cpor_619, retro_cpor_938,
Ciona savignyi	ENSCSAVG00000008588	ortholog_many2many	1 retrogene	retro_csav_3,
Echinops telfairi	ENSETEG00000010996	ortholog_one2one	1 retrogene	retro_etel_43,
Ficedula albicollis	ENSFALG00000005812	ortholog_one2one	1 retrogene	retro_falb_18,
Felis catus	ENSFCAG00000001132	ortholog_one2one	6 retrogenes	retro_fcat_132, retro_fcat_1331, retro_fcat_1571, retro_fcat_1775, retro_fcat_556, retro_fcat_79,
Gallus gallus	ENSGALG00000006512	ortholog_one2one	1 retrogene	retro_ggal_8,
Gorilla gorilla	ENSGGOG00000008381	ortholog_one2one	8 retrogenes	retro_ggor_1053, retro_ggor_1810, retro_ggor_1888, retro_ggor_1918, retro_ggor_2501, retro_ggor_3054, retro_ggor_3057, retro_ggor_360,
Loxodonta africana	ENSLAFG00000030312	ortholog_one2one	4 retrogenes	retro_lafr_1218, retro_lafr_391, retro_lafr_790, retro_lafr_797,
Meleagris gallopavo	ENSMGAG00000001929	ortholog_one2one	1 retrogene	retro_mgal_9,
Myotis lucifugus	ENSMLUG00000004834	ortholog_one2one	3 retrogenes	retro_mluc_1800, retro_mluc_2300, retro_mluc_777,
Monodelphis domestica	ENSMODG00000012958	ortholog_one2many	2 retrogenes	retro_mdom_127, retro_mdom_99,
Mustela putorius furo	ENSMPUG00000005810	possible_ortholog	9 retrogenes	retro_mputfur_1048, retro_mputfur_1056, retro_mputfur_1144, retro_mputfur_131, retro_mputfur_188, retro_mputfur_309, retro_mputfur_627, retro_mputfur_694, retro_mputfur_958,
Mus musculus	ENSMUSG00000015656	ortholog_one2one	8 retrogenes	retro_mmus_2244, retro_mmus_2584, retro_mmus_26, retro_mmus_2621, retro_mmus_2840, retro_mmus_316, retro_mmus_351, retro_mmus_620,
Oryctolagus cuniculus	ENSOCUG00000015533	ortholog_one2one	4 retrogenes	retro_ocun_1308, retro_ocun_53, retro_ocun_584, retro_ocun_753,
Oreochromis niloticus	ENSONIG00000004759	ortholog_one2many	1 retrogene	retro_onil_2,
Pongo abelii	ENSPPYG00000003987	ortholog_one2one	9 retrogenes	retro_pabe_183, retro_pabe_2193, retro_pabe_2254, retro_pabe_2260, retro_pabe_2261, retro_pabe_3153, retro_pabe_355, retro_pabe_3804, retro_pabe_3808,
Pelodiscus sinensis	ENSPSIG00000012450	ortholog_one2one	2 retrogenes	retro_psin_17, retro_psin_5,
Taeniopygia guttata	ENSTGUG00000000491	ortholog_one2one	1 retrogene	retro_tgut_7,
Takifugu rubripes	ENSTRUG00000005265	ortholog_one2one	1 retrogene	retro_trub_30,
Tursiops truncatus	ENSTTRG00000011139	ortholog_one2one	6 retrogenes	retro_ttru_1507, retro_ttru_1650, retro_ttru_1696, retro_ttru_35, retro_ttru_741, retro_ttru_808,
Xiphophorus maculatus	ENSXMAG00000001602	ortholog_one2many	1 retrogene	retro_xmac_20,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_721	96.60	98.63	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_2388	74.63	51.52	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_3306	94.96	99.85	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_3898	84.96	84.67	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_4057	94.31	98.78	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000007648 retrocopies

Parental gene:	HSPA8, ENSCJAG00000007648
Aliases:	None
Description:	heat shock 70kDa protein 8 [Source:HGNC Symbol;Acc:5241]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	11:20808397..20813704(-)

Parental gene:

HSPA8, ENSCJAG00000007648