RetrogeneDB ID: | retro_cjac_2290 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 3:149797863..149798720(-) | ||
Located in intron of: | ENSCJAG00000019363 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000007094 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.63 % |
Parental protein coverage: | 86.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIVTAGARQQEGESRLN |
IL.K..ADELALVDV.EDKLKGEMM.L.HGSLFL..PKIV..KD..VT.NSK.V..TAG.RQQ.GESRLN | |
Retrocopy | ILGKFPADELALVDVLEDKLKGEMMNL*HGSLFLHMPKIVADKDHSVTINSKIVMITAGVRQQDGESRLN |
Parental | LVQRNVNIFKFIIPNVVKYSPNCKLLIVSN-PVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGER |
LVQRN.N.FKFIIP....YSP.....IV...P.....YV.WK.SG.PK..VIGSGCNLDSARF.Y.M.E. | |
Retrocopy | LVQRNLNVFKFIIPQIIRYSPD-GIIIVVS<PTSRYSYVTWKLSGLPKHCVIGSGCNLDSARFCYVMAEK |
Parental | LGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKTLHPELGTDTDKEQWKEVHKQVVESAYEVIKLKGY |
.G..P.SCHGW.LGE.G..SV..WSGVNVAGVSL..L.PE.GTD.D.E..KEVHK.V.ESAYEVIKLKGY | |
Retrocopy | FGIYPSSCHGWNLGEYGN*SVAMWSGVNVAGVSLQELNPEMGTDNDSENQKEVHKMVAESAYEVIKLKGY |
Parental | TSWAIGLSVADLAETIMKNLRRVHPISTMIKGLYGIKDDVFLSVPCILGQNGISDVVKVTLTPEEEARLK |
T.WA.GLSV..L.......L.R..P.STM.KG..GI...VFLS..CIL...G........L.....A.L. | |
Retrocopy | TNWATGLSVQILLNPC-ESLPRIQPMSTMVKGMFGIENEVFLSLLCILNAQGLTSIINRKLKDDAVAELR |
Parental | KSADTLWGI |
KSADTLW.I | |
Retrocopy | KSADTLWDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .82 RPM | 101 .75 RPM |
SRP051959_heart | 0 .56 RPM | 39 .22 RPM |
SRP051959_kidney | 1 .11 RPM | 60 .59 RPM |
SRP051959_liver | 0 .56 RPM | 174 .91 RPM |
SRP051959_lung | 1 .19 RPM | 31 .41 RPM |
SRP051959_lymph_node | 0 .37 RPM | 36 .30 RPM |
SRP051959_skeletal_muscle | 0 .35 RPM | 266 .88 RPM |
SRP051959_spleen | 1 .20 RPM | 28 .07 RPM |