Parental gene:

ENSCJAG00000007094

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:81919966..81935275(+)


>ENSCJAG00000007094
ATGGGTGAGCCCTCAGGAGGCTATACTTACACCCAAACGTCGATATTCCTTTTCCACGCCAAGGTTCCTTTTGGTTCCAA
GTCCAAAATGGCAACTCTCAAGGATCAGCTGATTCATAATCTTCTAAAGGAAGAACAGACCCCCCAGAATAAGATTACAG
TTGTTGGGGTTGGTGCTGTTGGTATGGCCTGTGCCATCAGTATCTTAATGAAGGACTTGGCAGATGAACTTGCTCTTGTT
GATGTCATTGAAGACAAATTGAAGGGAGAGATGATGGATCTTCAACATGGCAGCCTTTTCCTTAGAACACCAAAGATTGT
CTCTGGCAAAGATTATAATGTAACTGCAAACTCCAAGCTGGTCATTGTTACGGCTGGGGCACGTCAGCAAGAGGGAGAAA
GCCGTCTTAATTTGGTCCAGCGTAACGTGAACATCTTTAAATTCATCATTCCTAATGTTGTAAAATACAGCCCGAACTGC
AAGTTGCTTATTGTTTCAAATCCAGTGGATATCTTGACCTATGTGGCTTGGAAGATAAGTGGCTTTCCCAAAAACCGTGT
TATTGGAAGTGGTTGCAATCTGGATTCAGCCAGATTCCGTTACCTGATGGGGGAAAGGCTGGGAGTTCACCCATTAAGCT
GTCATGGGTGGGTCCTTGGGGAACATGGAGATTCCAGTGTGCCTGTATGGAGTGGAGTGAATGTTGCTGGTGTCTCCCTG
AAGACTCTGCACCCAGAGTTAGGGACTGATACAGATAAGGAACAGTGGAAAGAGGTTCACAAGCAGGTGGTTGAGAGTGC
TTACGAGGTGATCAAACTCAAAGGCTACACATCCTGGGCCATTGGACTTTCTGTGGCAGATTTGGCAGAGACTATAATGA
AGAATCTTAGGCGGGTGCACCCAATTTCCACCATGATTAAGGGTCTCTATGGAATAAAGGATGATGTCTTCCTTAGTGTC
CCTTGCATTTTGGGACAGAATGGAATCTCAGACGTTGTGAAGGTGACTCTGACTCCTGAGGAAGAGGCCCGTTTGAAGAA
GAGTGCGGATACACTTTGGGGGATCCAAAAAGAGCTGCAATTTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 28 .07 RPM
SRP051959_skeletal_muscle 266 .88 RPM
SRP051959_lymph_node 36 .30 RPM
SRP051959_lung 31 .41 RPM
SRP051959_liver 174 .91 RPM
SRP051959_kidney 60 .59 RPM
SRP051959_heart 39 .22 RPM
SRP051959_colon 101 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017854 ortholog_one2many 2 retrogenes
retro_amel_389, retro_amel_462,
Bos taurus ENSBTAG00000008683 ortholog_one2many 2 retrogenes
retro_btau_1715, retro_btau_1822,
Choloepus hoffmanni ENSCHOG00000009977 ortholog_one2many 14 retrogenes
retro_chof_1038, retro_chof_144, retro_chof_1489, retro_chof_1524, retro_chof_1547, retro_chof_172, retro_chof_1874, retro_chof_2121, retro_chof_217, retro_chof_2365, retro_chof_2588, retro_chof_2611, retro_chof_552, retro_chof_990,
Callithrix jacchus ENSCJAG00000007067 within_species_paralog 2 retrogenes
retro_cjac_164, retro_cjac_2180,
Cavia porcellus ENSCPOG00000011926 ortholog_one2many 2 retrogenes
retro_cpor_1055, retro_cpor_427,
Dasypus novemcinctus ENSDNOG00000018915 ortholog_one2many 11 retrogenes
retro_dnov_1063, retro_dnov_1366, retro_dnov_1429, retro_dnov_1707, retro_dnov_1848, retro_dnov_2417, retro_dnov_362, retro_dnov_669, retro_dnov_797, retro_dnov_821, retro_dnov_887,
Equus caballus ENSECAG00000020669 ortholog_one2many 5 retrogenes
retro_ecab_1004, retro_ecab_765, retro_ecab_837, retro_ecab_924, retro_ecab_933,
Echinops telfairi ENSETEG00000007508 ortholog_one2many 15 retrogenes
retro_etel_1091, retro_etel_1192, retro_etel_1243, retro_etel_1309, retro_etel_1439, retro_etel_1609, retro_etel_1870, retro_etel_1916, retro_etel_1969, retro_etel_1996, retro_etel_2209, retro_etel_361, retro_etel_392, retro_etel_828, retro_etel_884,
Homo sapiens ENSG00000134333 ortholog_one2many 5 retrogenes
retro_hsap_2097, retro_hsap_2285, retro_hsap_3021, retro_hsap_323, retro_hsap_4231,
Gorilla gorilla ENSGGOG00000010350 ortholog_many2many 3 retrogenes
retro_ggor_1698, retro_ggor_349, retro_ggor_619,
Loxodonta africana ENSLAFG00000011307 ortholog_many2many 1 retrogene
retro_lafr_11,
Macropus eugenii ENSMEUG00000001462 ortholog_one2many 91 retrogenes
retro_meug_101, retro_meug_1029, retro_meug_103, retro_meug_1082, retro_meug_1088, retro_meug_1105, retro_meug_1140, retro_meug_1162, retro_meug_1189, retro_meug_1190, retro_meug_1260, retro_meug_1288, retro_meug_1295, retro_meug_1301, retro_meug_1323, retro_meug_1329, retro_meug_1332, retro_meug_1356, retro_meug_1368, retro_meug_1376, retro_meug_1400, retro_meug_1402, retro_meug_1404, retro_meug_1417, retro_meug_1419, retro_meug_1420, retro_meug_1422, retro_meug_1484, retro_meug_1535, retro_meug_155, retro_meug_1556, retro_meug_1620, retro_meug_1632, retro_meug_1652, retro_meug_1674, retro_meug_1685, retro_meug_1720, retro_meug_1721, retro_meug_1747, retro_meug_1749, retro_meug_1765, retro_meug_1779, retro_meug_1781, retro_meug_181, retro_meug_1824, retro_meug_1875, retro_meug_1898, retro_meug_1906, retro_meug_1915, retro_meug_1927, retro_meug_1945, retro_meug_1977, retro_meug_200, retro_meug_2000, retro_meug_2022, retro_meug_2067, retro_meug_2107, retro_meug_2126, retro_meug_2137, retro_meug_2139, retro_meug_2168, retro_meug_226, retro_meug_244, retro_meug_291, retro_meug_336, retro_meug_351, retro_meug_436, retro_meug_448, retro_meug_477, retro_meug_532, retro_meug_572, retro_meug_590, retro_meug_591, retro_meug_626, retro_meug_634, retro_meug_638, retro_meug_639, retro_meug_660, retro_meug_68, retro_meug_736, retro_meug_737, retro_meug_832, retro_meug_861, retro_meug_867, retro_meug_870, retro_meug_891, retro_meug_916, retro_meug_927, retro_meug_971, retro_meug_980, retro_meug_981,
Macaca mulatta ENSMMUG00000031024 ortholog_one2many 2 retrogenes
retro_mmul_1037, retro_mmul_587,
Monodelphis domestica ENSMODG00000006522 ortholog_many2many 2 retrogenes
retro_mdom_161, retro_mdom_206,
Mus musculus ENSMUSG00000063229 ortholog_one2many 14 retrogenes
retro_mmus_1044, retro_mmus_1300, retro_mmus_1514, retro_mmus_1608, retro_mmus_1753, retro_mmus_1887, retro_mmus_1889, retro_mmus_1925, retro_mmus_2078, retro_mmus_2592, retro_mmus_2885, retro_mmus_3150, retro_mmus_3694, retro_mmus_497,
Nomascus leucogenys ENSNLEG00000017767 ortholog_one2many 4 retrogenes
retro_nleu_1037, retro_nleu_1303, retro_nleu_1766, retro_nleu_820,
Oryctolagus cuniculus ENSOCUG00000015939 ortholog_many2many 6 retrogenes
retro_ocun_1597, retro_ocun_1817, retro_ocun_246, retro_ocun_338, retro_ocun_574, retro_ocun_746,
Pongo abelii ENSPPYG00000003437 ortholog_one2many 5 retrogenes
retro_pabe_2002, retro_pabe_2039, retro_pabe_2423, retro_pabe_3407, retro_pabe_364,
Pan troglodytes ENSPTRG00000003421 ortholog_one2many 5 retrogenes
retro_ptro_1540, retro_ptro_1618, retro_ptro_2039, retro_ptro_259, retro_ptro_2875,
Rattus norvegicus ENSRNOG00000013009 ortholog_many2many 17 retrogenes
retro_rnor_1131, retro_rnor_1336, retro_rnor_1738, retro_rnor_1769, retro_rnor_1881, retro_rnor_2146, retro_rnor_2377, retro_rnor_2560, retro_rnor_2830, retro_rnor_2950, retro_rnor_2957, retro_rnor_2984, retro_rnor_490, retro_rnor_491, retro_rnor_563, retro_rnor_578, retro_rnor_843,
Sorex araneus ENSSARG00000001224 ortholog_one2many 1 retrogene
retro_sara_657,
Sarcophilus harrisii ENSSHAG00000015776 ortholog_one2many 1 retrogene
retro_shar_814,
Sus scrofa ENSSSCG00000013366 ortholog_one2many 1 retrogene
retro_sscr_12,
Tarsius syrichta ENSTSYG00000008062 possible_ortholog 4 retrogenes
retro_tsyr_1811, retro_tsyr_2064, retro_tsyr_2071, retro_tsyr_731,
Tursiops truncatus ENSTTRG00000013756 ortholog_one2many 2 retrogenes
retro_ttru_1269, retro_ttru_1802,
Vicugna pacos ENSVPAG00000010215 ortholog_one2many 5 retrogenes
retro_vpac_175, retro_vpac_222, retro_vpac_237, retro_vpac_629, retro_vpac_79,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2290 62.63 86.75
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Download FASTA sequences of all ENSCJAG00000007094 retrocopies