RetrogeneDB - Parental gene ENSCJAG00000008022 details

							
>ENSCJAG00000008022
ATGGTGAAAGAAACCACTTACTACGATGTTTTGGGAGTCAAACCCAATGCTACTCAGGAAGAATTGAAAAAGGCTTATAG

GAAACTGGCCTTGAAGTACCATCCTGATAAGAATCCAAATGAAGGAGAGAAGTTTAAACAGATATCTCAAGCTTACGAAG

TTCTCTCTGATGCAAAGAAAAGGGAATTATATGACAAAGGAGGAGAACAGGCAATTAAAGAGGGTGGAGCAGGTGGCGGT

TTTGGCTCTCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAAAAATGT

TGTACATCAGCTCTCAGTAACCCTAGAAGACTTATATAATGGTGCAACAAGAAAACTGGCTTTGCAAAAGAATGTGATTT

GTGACAAATGCGAAGGTAGAGGAGGTAAGAAAGGAGCAGTAGAGTGCTGTCCCAATTGCCGAGGTACTGGAATGCAAATA

AGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTGTGCATGGAGTGCCAGGGCCATGGGGAGCGGAT

CAGTCCTAAAGATAGATGTAAAAGCTGCAATGGAAGGAAGATAGTTCGAGAGAAGAAGATTCTAGAAGTTCATATTGACA

AAGGCATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAACCAGGACTGGAGCCAGGAGATATAATC

ATTGTGTTAGATCAGAAGGACCATGCTGTTTTTACTCGACGAGGAGAAGACCTTTTCATGTGTATGGACATACAGCTGGT

TGAAGCACTGTGTGGCTTCCAAAAGCCGATATCTACTCTTGACAACCGAACCATAGTCATCACCTCTCATCCAGGTCAGA

TTGTCAAGCATGGAGATATCAAGTGTGTACTAAATGAAGGCATGCCAATTTATCGTAGACCATATGAAAAGGGTCGCCTA

ATCATTGAATTTAAGGTAAACTTCCCTGAGAATGGCTTTCTCTCTCCTGATAAACTGTCTTTGCTGGAAAAACTCCTACC

GGAGAGGAAGGAAGTGGAAGAGACTGATGAGATGGATCAAGTAGAACTGGTGGACTTTGATCCAAATCAGGAAAGACGGC

GCCATTACAATGGAGAAGCATATGAGGATGATGAACATCATCCCAGAGGTGGTGTTCAGTGTCAGACCTCTTAA

Library	Parental gene expression (RPM)
SRP051959_spleen	75 .04 RPM
SRP051959_skeletal_muscle	37 .74 RPM
SRP051959_lymph_node	71 .32 RPM
SRP051959_lung	74 .47 RPM
SRP051959_liver	102 .80 RPM
SRP051959_kidney	74 .37 RPM
SRP051959_heart	44 .97 RPM
SRP051959_colon	49 .90 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000007589	possible_ortholog	4 retrogenes	retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Bos taurus	ENSBTAG00000016265	possible_ortholog	6 retrogenes	retro_btau_1440, retro_btau_1599, retro_btau_1800, retro_btau_1826, retro_btau_574, retro_btau_828,
Canis familiaris	ENSCAFG00000001818	possible_ortholog	23 retrogenes	retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
Choloepus hoffmanni	ENSCHOG00000000631	possible_ortholog	9 retrogenes	retro_chof_1760, retro_chof_186, retro_chof_2020, retro_chof_2541, retro_chof_2694, retro_chof_287, retro_chof_417, retro_chof_498, retro_chof_946,
Cavia porcellus	ENSCPOG00000000462	ortholog_one2one	6 retrogenes	retro_cpor_1456, retro_cpor_225, retro_cpor_386, retro_cpor_396, retro_cpor_561, retro_cpor_781,
Dasypus novemcinctus	ENSDNOG00000018342	possible_ortholog	3 retrogenes	retro_dnov_1139, retro_dnov_640, retro_dnov_884,
Homo sapiens	ENSG00000086061	possible_ortholog	4 retrogenes	retro_hsap_2331, retro_hsap_2569, retro_hsap_3647, retro_hsap_4889,
Gorilla gorilla	ENSGGOG00000007030	possible_ortholog	3 retrogenes	retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Myotis lucifugus	ENSMLUG00000016086	ortholog_one2one	7 retrogenes	retro_mluc_1245, retro_mluc_1485, retro_mluc_1737, retro_mluc_1878, retro_mluc_2062, retro_mluc_2579, retro_mluc_576,
Monodelphis domestica	ENSMODG00000003384	ortholog_one2many	7 retrogenes	retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Mus musculus	ENSMUSG00000028410	ortholog_one2one	3 retrogenes	retro_mmus_2561, retro_mmus_2982, retro_mmus_3507,
Procavia capensis	ENSPCAG00000012273	ortholog_one2one	2 retrogenes	retro_pcap_184, retro_pcap_220,
Pongo abelii	ENSPPYG00000019141	possible_ortholog	4 retrogenes	retro_pabe_1892, retro_pabe_2111, retro_pabe_2559, retro_pabe_2994,
Pan troglodytes	ENSPTRG00000020852	possible_ortholog	4 retrogenes	retro_ptro_1499, retro_ptro_1705, retro_ptro_177, retro_ptro_2472,
Pteropus vampyrus	ENSPVAG00000011470	ortholog_one2one	1 retrogene	retro_pvam_672,
Rattus norvegicus	ENSRNOG00000007029	ortholog_one2one	2 retrogenes	retro_rnor_2208, retro_rnor_608,
Sorex araneus	ENSSARG00000001373	ortholog_one2one	5 retrogenes	retro_sara_280, retro_sara_312, retro_sara_671, retro_sara_741, retro_sara_748,
Sarcophilus harrisii	ENSSHAG00000012366	ortholog_one2many	1 retrogene	retro_shar_762,
Ictidomys tridecemlineatus	ENSSTOG00000005200	ortholog_one2one	4 retrogenes	retro_itri_265, retro_itri_303, retro_itri_378, retro_itri_809,
Tupaia belangeri	ENSTBEG00000000596	possible_ortholog	23 retrogenes	retro_tbel_1281, retro_tbel_134, retro_tbel_1529, retro_tbel_1542, retro_tbel_2260, retro_tbel_2293, retro_tbel_2316, retro_tbel_2428, retro_tbel_2445, retro_tbel_2917, retro_tbel_2965, retro_tbel_2972, retro_tbel_329, retro_tbel_3345, retro_tbel_3353, retro_tbel_3692, retro_tbel_4014, retro_tbel_4223, retro_tbel_432, retro_tbel_591, retro_tbel_617, retro_tbel_634, retro_tbel_842,
Tarsius syrichta	ENSTSYG00000001329	ortholog_one2one	4 retrogenes	retro_tsyr_110, retro_tsyr_1384, retro_tsyr_1921, retro_tsyr_57,
Tursiops truncatus	ENSTTRG00000007387	possible_ortholog	4 retrogenes	retro_ttru_1181, retro_ttru_1551, retro_ttru_567, retro_ttru_783,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_887	88.62	81.36	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_1645	98.74	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_1777	85.21	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_2015	88.97	65.99	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_2120	95.24	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_2730	62.16	64.74	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_2731	93.19	70.28	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_2763	93.95	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_3037	83.05	97.50	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cjac_3762	87.72	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000008022 retrocopies

Parental gene:	DNAJA1, ENSCJAG00000008022
Aliases:	None
Description:	None
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	1:135059600..135073642(+)

Parental gene:

DNAJA1, ENSCJAG00000008022