RetrogeneDB ID: | retro_mmus_2561 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:39798213..39799404(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083261 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dnaja1 | ||
Ensembl ID: | ENSMUSG00000028410 | ||
Aliases: | Dnaja1, Hsj2, Nedd7 | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:MGI Symbol;Acc:MGI:1270129] |
Percent Identity: | 98.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQ |
MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQ | |
Retrocopy | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGEQ |
Parental | AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR |
AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLA.QKNVICDKCEGR | |
Retrocopy | AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLARQKNVICDKCEGR |
Parental | GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEV |
GGKKGAVECCP.CRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEV | |
Retrocopy | GGKKGAVECCPSCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEV |
Parental | HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL |
HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFT.RGEDLFMCMDIQLVEALCGFQKPISTL | |
Retrocopy | HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTMRGEDLFMCMDIQLVEALCGFQKPISTL |
Parental | DNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK |
DNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK | |
Retrocopy | DNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK |
Parental | EVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS |
EVEETDE.DQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGV.CQTS | |
Retrocopy | EVEETDEIDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGV*CQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .19 RPM | 103 .33 RPM |
SRP007412_cerebellum | 0 .09 RPM | 81 .46 RPM |
SRP007412_heart | 0 .03 RPM | 33 .68 RPM |
SRP007412_kidney | 0 .56 RPM | 125 .45 RPM |
SRP007412_liver | 0 .27 RPM | 146 .46 RPM |
SRP007412_testis | 0 .23 RPM | 69 .93 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_114044 | 184 libraries | 393 libraries | 479 libraries | 15 libraries | 1 library |