Parental gene:

ENSSTOG00000005200

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393334.1:1601125..1610482(+)


>ENSSTOG00000005200
ATGGTGAAAGAAACCACTTACTATGATGTTTTGGGGGTCAAACCCAATGCCACCCAGGAAGAATTAAAAAAGGCTTACAG
AAAACTGGCCTTGAAGTACCACCCTGATAAGAATCCAAATGAAGGTGAAAAGGCAATTTTTAAACAGATTTCTCAAGCTT
ATGAAGTTCTCTCTGATGCCAAGAAAAGGGAATTATATGACAAAGGAGGAGAACAGGCAATTAAGGAGGGTGGAGCAGGT
GGTGGTTTTGGCTCCCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAA
AAACGTTGTGCACCAGCTCTCAGTAACATTAGAAGACTTATATAATGGTGCAACAAGAAAACTGGCTCTGCAAAAGAATG
TGATTTGTGACAAATGTGAAGGCCGAGGTGGTAAGAAAGGAGCAGTAGAGTGCTGTCCCAACTGCCGAGGTACTGGAATG
CAAATAAGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTGTGCATGGAGTGCCAGGGCCATGGGGA
ACGGATCAGTCCTAAAGATAGATGTAAAAGCTGCAATGGAAGGAAGATAGTTCGAGAGAAGAAGATTCTGGAAGTTCATA
TTGACAAAGGCATGAAAGATGGACAGAAGATAACATTCCATGGTGAAGGAGACCAAGAGCCAGGACTGGAACCAGGAGAT
ATTATCATTGTATTAGATCAGAAGGACCATGCTGTTTTTACTCGACGAGGAGAAGACCTTTTCATGTGTATGGACATACA
GCTGGTGGAAGCATTATGTGGCTTCCAGAAGCCAATATCTACTCTTGATAATCGAACCATAGTCATCACCTCTCATCCAG
GTCAGATTGTCAAGCATGGAGATATAAAGTGTGTGCTAAATGAAGGTATGCCAATTTATCGTAGACCATATGAAAAGGGT
CGCCTAATCATCGAGTTTAAGGTAAACTTTCCTGAAAATGGCTTTCTGTCTCCTGACAAACTCTCTTTGCTGGAAAAACT
CCTACCTGAGAGGAAGGAAGTGGAAGAGACTGATGAAATGGATCAGGTAGAACTGGTGGACTTTGATCCAAATCAGGAAA
GACGGCGCCATTATAATGGAGAAGCATATGAGGATGATGAACATCATCCCAGAGGTGGTGTTCAGTGTCAAACCTCTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007589 possible_ortholog 4 retrogenes
retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Bos taurus ENSBTAG00000016265 possible_ortholog 6 retrogenes
retro_btau_1440, retro_btau_1599, retro_btau_1800, retro_btau_1826, retro_btau_574, retro_btau_828,
Canis familiaris ENSCAFG00000001818 possible_ortholog 23 retrogenes
retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
Choloepus hoffmanni ENSCHOG00000000631 possible_ortholog 9 retrogenes
retro_chof_1760, retro_chof_186, retro_chof_2020, retro_chof_2541, retro_chof_2694, retro_chof_287, retro_chof_417, retro_chof_498, retro_chof_946,
Callithrix jacchus ENSCJAG00000008022 ortholog_one2one 10 retrogenes
retro_cjac_1645, retro_cjac_1777, retro_cjac_2015, retro_cjac_2120, retro_cjac_2730, retro_cjac_2731, retro_cjac_2763, retro_cjac_3037, retro_cjac_3762, retro_cjac_887,
Cavia porcellus ENSCPOG00000000462 ortholog_one2one 6 retrogenes
retro_cpor_1456, retro_cpor_225, retro_cpor_386, retro_cpor_396, retro_cpor_561, retro_cpor_781,
Dasypus novemcinctus ENSDNOG00000018342 possible_ortholog 3 retrogenes
retro_dnov_1139, retro_dnov_640, retro_dnov_884,
Homo sapiens ENSG00000086061 possible_ortholog 4 retrogenes
retro_hsap_2331, retro_hsap_2569, retro_hsap_3647, retro_hsap_4889,
Gorilla gorilla ENSGGOG00000007030 possible_ortholog 3 retrogenes
retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Myotis lucifugus ENSMLUG00000016086 ortholog_one2one 7 retrogenes
retro_mluc_1245, retro_mluc_1485, retro_mluc_1737, retro_mluc_1878, retro_mluc_2062, retro_mluc_2579, retro_mluc_576,
Monodelphis domestica ENSMODG00000003384 ortholog_one2many 7 retrogenes
retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Mus musculus ENSMUSG00000028410 ortholog_one2one 3 retrogenes
retro_mmus_2561, retro_mmus_2982, retro_mmus_3507,
Procavia capensis ENSPCAG00000012273 ortholog_one2many 2 retrogenes
retro_pcap_184, retro_pcap_220,
Pongo abelii ENSPPYG00000019141 possible_ortholog 4 retrogenes
retro_pabe_1892, retro_pabe_2111, retro_pabe_2559, retro_pabe_2994,
Pan troglodytes ENSPTRG00000020852 possible_ortholog 4 retrogenes
retro_ptro_1499, retro_ptro_1705, retro_ptro_177, retro_ptro_2472,
Pteropus vampyrus ENSPVAG00000011470 ortholog_one2one 1 retrogene
retro_pvam_672,
Rattus norvegicus ENSRNOG00000007029 ortholog_one2one 2 retrogenes
retro_rnor_2208, retro_rnor_608,
Sorex araneus ENSSARG00000001373 ortholog_one2one 5 retrogenes
retro_sara_280, retro_sara_312, retro_sara_671, retro_sara_741, retro_sara_748,
Sarcophilus harrisii ENSSHAG00000012366 ortholog_one2many 1 retrogene
retro_shar_762,
Ictidomys tridecemlineatus ENSSTOG00000004007 within_species_paralog 1 retrogene
retro_itri_343,
Ictidomys tridecemlineatus ENSSTOG00000009449 within_species_paralog 1 retrogene
retro_itri_1356,
Tupaia belangeri ENSTBEG00000000596 possible_ortholog 23 retrogenes
retro_tbel_1281, retro_tbel_134, retro_tbel_1529, retro_tbel_1542, retro_tbel_2260, retro_tbel_2293, retro_tbel_2316, retro_tbel_2428, retro_tbel_2445, retro_tbel_2917, retro_tbel_2965, retro_tbel_2972, retro_tbel_329, retro_tbel_3345, retro_tbel_3353, retro_tbel_3692, retro_tbel_4014, retro_tbel_4223, retro_tbel_432, retro_tbel_591, retro_tbel_617, retro_tbel_634, retro_tbel_842,
Tarsius syrichta ENSTSYG00000001329 ortholog_one2one 4 retrogenes
retro_tsyr_110, retro_tsyr_1384, retro_tsyr_1921, retro_tsyr_57,
Tursiops truncatus ENSTTRG00000007387 possible_ortholog 4 retrogenes
retro_ttru_1181, retro_ttru_1551, retro_ttru_567, retro_ttru_783,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_265 96.00 100.00
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2. retro_itri_303 64.94 81.20
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3. retro_itri_378 80.33 75.44
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4. retro_itri_809 79.75 58.65
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Download FASTA sequences of all ENSSTOG00000005200 retrocopies