Parental gene:

DNAJA1, ENSPCAG00000012273

Aliases:None
Description:DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229]
Organism:Hyrax (Procavia capensis)
Coordinates:GeneScaffold_920:3525..9757(+)


>ENSPCAG00000012273
AAAAACGTTGTACATCAGCTTTCAGTAACATTAGAAGACTTATATAATGGTGCAACAAGAAAGCTAGCTCTGCAAAAGAA
TGTGATTTGTGACAAATGTGAAGGCCGAGGTGGTAAGAAAGGAGCAGTAGAGTGTTGTCCTAATTGCCGAGGTACTGGGA
TGCAAATACGAATTCATCAGATTGGACCGGGAATGGTTCAGCAAATTCAGTCTGTGTGCATGGAGTGCCAGGGTCATGGG
GAACGGATCAGCCCGAAAGATAGATGTAAAAGTTGCAATGGAAGGAAGATTGTTCGAGAGAAGAAGATTCTAGAAGTTCA
CATTGACAAAGGAATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAGCCAGGACTGGAGCCAGGGG
ATATTATCATTGTTCTAGATCAGAAGGACCATGCTGTTTTTACTAGACGAGGAGAAGACCTCTTCATGTGTATGGACATA
CAGCTGGTTGAAGCACTGTGTGGCTTCCAGAAGCCGATATCTACTCTTGATAACCGAACCATAGTCATCACTTCTCATCC
AGGTCAGATTGTCAAGCATGAAGATATCAAGTGTGTGCTAAATGAAGGCATGCCAATTTATCGTAGGCCATATGAAAAGG
GGCGCCTGATCATCCAATTTAAGGTAAACTTCCCTGAGAATGGTTTTCTTTCTCCTGATAAACTTGCTTTGCTGGAAAAA
CTCCTACCAGAGAGGAAGGAAGTAGAAGAGACTGATGAAATGGATCAGGTAGAACTGGTGGACTTTGATCCGAACCAGGA
AAGGCGACGCCATTACAACGGAGAAGCATATGAGGATGACGACACAGACCATCACCCGAGAGGTGGGGTTCAGTGCCAGA
CCTCTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007589 possible_ortholog 4 retrogenes
retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Canis familiaris ENSCAFG00000001818 possible_ortholog 23 retrogenes
retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
Callithrix jacchus ENSCJAG00000008022 ortholog_one2one 10 retrogenes
retro_cjac_1645, retro_cjac_1777, retro_cjac_2015, retro_cjac_2120, retro_cjac_2730, retro_cjac_2731, retro_cjac_2763, retro_cjac_3037, retro_cjac_3762, retro_cjac_887,
Cavia porcellus ENSCPOG00000000462 ortholog_one2many 6 retrogenes
retro_cpor_1456, retro_cpor_225, retro_cpor_386, retro_cpor_396, retro_cpor_561, retro_cpor_781,
Gorilla gorilla ENSGGOG00000007030 possible_ortholog 3 retrogenes
retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Myotis lucifugus ENSMLUG00000016086 ortholog_one2many 7 retrogenes
retro_mluc_1245, retro_mluc_1485, retro_mluc_1737, retro_mluc_1878, retro_mluc_2062, retro_mluc_2579, retro_mluc_576,
Monodelphis domestica ENSMODG00000003384 ortholog_one2one 7 retrogenes
retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Mus musculus ENSMUSG00000028410 ortholog_one2one 3 retrogenes
retro_mmus_2561, retro_mmus_2982, retro_mmus_3507,
Pteropus vampyrus ENSPVAG00000011470 ortholog_one2one 1 retrogene
retro_pvam_672,
Rattus norvegicus ENSRNOG00000007029 ortholog_one2one 2 retrogenes
retro_rnor_2208, retro_rnor_608,
Sorex araneus ENSSARG00000001373 ortholog_one2one 5 retrogenes
retro_sara_280, retro_sara_312, retro_sara_671, retro_sara_741, retro_sara_748,
Sarcophilus harrisii ENSSHAG00000012366 ortholog_one2one 1 retrogene
retro_shar_762,
Ictidomys tridecemlineatus ENSSTOG00000005200 ortholog_one2many 4 retrogenes
retro_itri_265, retro_itri_303, retro_itri_378, retro_itri_809,
Tarsius syrichta ENSTSYG00000001329 ortholog_one2one 4 retrogenes
retro_tsyr_110, retro_tsyr_1384, retro_tsyr_1921, retro_tsyr_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pcap_184 81.75 84.07
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2. retro_pcap_220 88.69 92.88
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Download FASTA sequences of all ENSPCAG00000012273 retrocopies