Parental gene:

ENSCJAG00000009722

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:8150391..8165092(-)


>ENSCJAG00000009722
ATGGCGTCCGGCAGTAACTGGCTATCCGGGGTGAATGTCGTGCTGGTGATGGCCTACGGGAGCCTGGTGTTTGTACTGCT
ATTTATTTTTGTGAAGAGGCAAATCATGCGCTTTGCAATGAAATCTCGAAGGGGACCTCATGTCCCTGTGGGACACAATG
CCCCCAAGGACTTGAAAGAGGAGATTGATATTCGACTATCCAGGGTTCAGGATATCAAGTATGAACCCCAGCTCCTTGCA
GATGATGATGCTAGACTACTGCAGCTGGAAACCCAGGGAAATCAAAGTTGCTACAACTATCTGTATAGGATGAAAGCTCT
GGATGCCATCCGTGCCTCTGAGATCCCATTTCATTCTGAAGGCCGGCATCCCCGTTCCTTAATGGGCAAGAATTTCCGCT
CCTACCTGCTAGATCTACGAAACACTAGTACCCCTTTCAAGGGTGTACGCAAAGCCCTCATTGATACCCTGTTGGATGGC
TATGAAACAGCCCGCTATGGGACAGGGGTCTTTGGCCTGAATGAGTACCTACGCTATCAAGAGGCCCTGAGTGAACTGGC
CACCGTGGTCAAAGCACGGATTGGGAGCTCTCAGCGACACCACCAGTCAGCAGCCAAAGACCTAACTCAGTCCCCCGAAG
TCTCCCCAACAACCATCCAAGTGACATACCTCCCTTCCAGTCAGAAGAGTAAACGTGCCAAGCACTTCCTTGAATTGAAG
AGCTTTAAGGACAACTATAACACATTGGAGAGTACTCTGTGA

Library Parental gene expression (RPM)
SRP051959_colon 16 .88 RPM
SRP051959_heart 26 .98 RPM
SRP051959_kidney 29 .24 RPM
SRP051959_liver 26 .30 RPM
SRP051959_lung 19 .88 RPM
SRP051959_lymph_node 15 .23 RPM
SRP051959_skeletal_muscle 40 .68 RPM
SRP051959_spleen 20 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011865 possible_ortholog 1 retrogene
retro_amel_190,
Dasypus novemcinctus ENSDNOG00000019160 possible_ortholog 1 retrogene
retro_dnov_2515,
Dipodomys ordii ENSDORG00000005454 ortholog_one2many 1 retrogene
retro_dord_190,
Equus caballus ENSECAG00000017585 possible_ortholog 2 retrogenes
retro_ecab_618, retro_ecab_814,
Echinops telfairi ENSETEG00000001056 possible_ortholog 15 retrogenes
retro_etel_1138, retro_etel_1318, retro_etel_1388, retro_etel_1633, retro_etel_2182, retro_etel_2205, retro_etel_2206, retro_etel_394, retro_etel_651, retro_etel_719, retro_etel_720, retro_etel_773, retro_etel_842, retro_etel_957, retro_etel_981,
Macropus eugenii ENSMEUG00000002600 ortholog_one2many 6 retrogenes
retro_meug_1149, retro_meug_1298, retro_meug_1439, retro_meug_1637, retro_meug_213, retro_meug_69,
Myotis lucifugus ENSMLUG00000013338 possible_ortholog 1 retrogene
retro_mluc_537,
Monodelphis domestica ENSMODG00000017237 ortholog_one2many 3 retrogenes
retro_mdom_1283, retro_mdom_2003, retro_mdom_323,
Mus musculus ENSMUSG00000027942 ortholog_one2many 6 retrogenes
retro_mmus_1014, retro_mmus_1018, retro_mmus_1020, retro_mmus_1107, retro_mmus_1792, retro_mmus_490,
Otolemur garnettii ENSOGAG00000012008 possible_ortholog 2 retrogenes
retro_ogar_2563, retro_ogar_38,
Ochotona princeps ENSOPRG00000007244 ortholog_one2many 2 retrogenes
retro_opri_426, retro_opri_586,
Pongo abelii ENSPPYG00000000785 ortholog_one2many 2 retrogenes
retro_pabe_3590, retro_pabe_969,
Pteropus vampyrus ENSPVAG00000002717 possible_ortholog 1 retrogene
retro_pvam_696,
Rattus norvegicus ENSRNOG00000017758 ortholog_many2many 1 retrogene
retro_rnor_139,
Sarcophilus harrisii ENSSHAG00000012915 ortholog_one2many 1 retrogene
retro_shar_740,
Tupaia belangeri ENSTBEG00000013866 ortholog_one2many 1 retrogene
retro_tbel_177,
Tarsius syrichta ENSTSYG00000012777 ortholog_one2many 1 retrogene
retro_tsyr_91,
Tursiops truncatus ENSTTRG00000015824 possible_ortholog 1 retrogene
retro_ttru_923,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_175 97.40 91.30
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Download FASTA sequences of all ENSCJAG00000009722 retrocopies