RetrogeneDB ID: | retro_meug_69 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_1186:42441..43184(+) | ||
Located in intron of: | ENSMEUG00000008272 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1orf43 | ||
Ensembl ID: | ENSMEUG00000002600 | ||
Aliases: | None | ||
Description: | chromosome 1 open reading frame 43 [Source:HGNC Symbol;Acc:29876] |
Percent Identity: | 76.1 % |
Parental protein coverage: | 96.85 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | SGVNVVLVMAYGSLV-FVLLFIFVKRQIMRFAMKSRRGP-HVPVGHNAPKDLKEEIDIRLSKVQDVKYEP |
S..N..L.MAY..L..FVLLFIFVK.QIM.FAMKS..GP..VPV.HNAPKDLKEEID..LSKVQDV.YEP | |
Retrocopy | SSSNITLLMAYRTLD<FVLLFIFVKKQIMHFAMKSQKGP<LVPVAHNAPKDLKEEIDT*LSKVQDVNYEP |
Parental | QLLEEDDARLLQLETPGNQHCYNYLYRMKALDAIRASEIPFHSEGRHPCSLMGKNFRSYLLELRNTSTPF |
QLL.E.DARLLQLETPGNQHCYN.LYRMKALDAI.ASEIPFHSEG.HPC.L...NF.SYL..L.N.STPF | |
Retrocopy | QLLKEGDARLLQLETPGNQHCYN*LYRMKALDAIHASEIPFHSEGWHPCFLINNNFHSYLPDL*NKSTPF |
Parental | KGVRKALIDTLLDGYETARYGTGVFGQTEYLHYQEALSELAA--AVKARGGSSQRQHQSAAKDLTQSPEV |
KGV.KALIDTLLD.YE.ARY.T.VF.QT.YL.Y..ALS.LA....VKA.GGSS..QHQ...K.LTQS.EV | |
Retrocopy | KGVHKALIDTLLDRYERARYETSVFDQTDYLQY*GALSKLADM*VVKACGGSS*WQHQLGPKNLTQSAEV |
Parental | SSPTTIQVTYLPSSQKSKRAKHFLELKSFKD-NYNTLESTL |
SS.TTIQVTYLPSSQ.SK.AKHFLELKSFKD.NYNTLESTL | |
Retrocopy | SSLTTIQVTYLPSSQNSKSAKHFLELKSFKD>NYNTLESTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011865 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009722 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019160 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005454 | 1 retrocopy | |
Equus caballus | ENSECAG00000017585 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001056 | 15 retrocopies | |
Macropus eugenii | ENSMEUG00000002600 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000013338 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017237 | 3 retrocopies | |
Mus musculus | ENSMUSG00000027942 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000012008 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000007244 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000000785 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002717 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017758 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012915 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013866 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012777 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015824 | 1 retrocopy |