Parental gene:

C1orf43, ENSOPRG00000007244

Aliases:None
Description:chromosome 1 open reading frame 43 [Source:HGNC Symbol;Acc:29876]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_3471:7093..11146(-)


>ENSOPRG00000007244
GACTTGAAGGAGGAGATTGATATTCGACTGTCCAGAGTTCAGGATATCAAGTATGAGCCCCAGCTCCTTGCAGATGATGA
CGCAAGACTGCTACAGCTGGAGACCCAGGGGAACCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGATCCCATTTCGCACTGAAGGTCGGCATCCCCGTTCCTTAATGGGCAAGAATTTCCGCTCCTACCTG
CTTGATCTGCGAAACACTAGCACTCCTTTCAAGGGTGTGCGCAAAGCCCTCATCGATACCCTGCTGGACGGCTACGAGAC
GGCACGCTACGGAACAGGGGTCTTTGGCCAGAATGAGTACCTGCGCTATCAGGAGGCCCTGAGTGAGCTGGCCACCGTGG
TGAAGGCACGAATGGGAAGCTCTCAGAGGCAGCACCAATCCGCAGCCAAGGACCTCACCCAGTCCCCCGAAGTCTCCCCA
ACAACCATCCAGGTGACGTACCTCCCCTCGAGTCAGAAGAGCAAACGTGCCAAGCACTTCCTCGAATTGAAGAGCTTTAA
GGACAACTATAACACCCTGGAAAGCACTCTGTGA

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009722 ortholog_one2many 1 retrogene
retro_cjac_175,
Dipodomys ordii ENSDORG00000005454 ortholog_one2one 1 retrogene
retro_dord_190,
Echinops telfairi ENSETEG00000001056 possible_ortholog 15 retrogenes
retro_etel_1138, retro_etel_1318, retro_etel_1388, retro_etel_1633, retro_etel_2182, retro_etel_2205, retro_etel_2206, retro_etel_394, retro_etel_651, retro_etel_719, retro_etel_720, retro_etel_773, retro_etel_842, retro_etel_957, retro_etel_981,
Macropus eugenii ENSMEUG00000002600 ortholog_one2one 6 retrogenes
retro_meug_1149, retro_meug_1298, retro_meug_1439, retro_meug_1637, retro_meug_213, retro_meug_69,
Myotis lucifugus ENSMLUG00000013338 possible_ortholog 1 retrogene
retro_mluc_537,
Monodelphis domestica ENSMODG00000017237 ortholog_one2one 3 retrogenes
retro_mdom_1283, retro_mdom_2003, retro_mdom_323,
Mus musculus ENSMUSG00000027942 ortholog_one2one 6 retrogenes
retro_mmus_1014, retro_mmus_1018, retro_mmus_1020, retro_mmus_1107, retro_mmus_1792, retro_mmus_490,
Otolemur garnettii ENSOGAG00000012008 possible_ortholog 2 retrogenes
retro_ogar_2563, retro_ogar_38,
Pongo abelii ENSPPYG00000000785 ortholog_one2one 2 retrogenes
retro_pabe_3590, retro_pabe_969,
Rattus norvegicus ENSRNOG00000017758 ortholog_one2many 1 retrogene
retro_rnor_139,
Sarcophilus harrisii ENSSHAG00000012915 ortholog_one2one 1 retrogene
retro_shar_740,
Tupaia belangeri ENSTBEG00000013866 ortholog_one2one 1 retrogene
retro_tbel_177,
Tarsius syrichta ENSTSYG00000012777 ortholog_one2one 1 retrogene
retro_tsyr_91,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_426 86.61 56.85
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2. retro_opri_586 86.61 56.85
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Download FASTA sequences of all ENSOPRG00000007244 retrocopies