Parental gene: | ENSCJAG00000009971 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:63363931..63400393(-) |
>ENSCJAG00000009971
ATGCCGCGGGTGTATATCGGCCGCCTGAGCTACCAGGCCCGGGAGCGCGATGTGGAGCGCTTCTTTAAGGGCTACGGGAA
GATCCTGGAGGTGGATCTGAAGAACGGATATGGTTTTGTGGAGTTTGATGATCTGCGTGATGCAGATGATGCTGTTTATG
AACTGAATGGCAAAGACCTTTGTGGTGAGCGAGTAATTGTTGAGCATGCCCGTGGCCCACGGCGAGATGGCAGTTACGGT
TCTGGACGCAGTGGATATGGTTATAGAAGAAGTGGCCGAGATAAATATGGCCCTCCTACTCGCACAGAGTACAGGCTTAT
TGTGGAGAATTTGTCAAGTCGGTGCAGCTGGCAAGACCTAAAGGATTATATGCGTCAGGCAGGAGAAGTGACTTATGCAG
ATGCTCACAAGGGACGCAAAAATGAAGGAGTGATTGAATTTGTATCTTATTCTGATATGAAAAGAGCTTTAGAAAAGTTG
GATGGAACTGAAGTCAATGGCAGAAAAATCCGATTAGTTGAAGACAAACCAGGTTCCAGACGACGCCGGTCCTACTCCAG
GAGCCGGAGCCATTCAAGGTCTCGCTCTCGAAGCAGACATTCCCGTAAGAGCAGAAGCCGAAGTGGAAGCAGCAAAAGCA
GTCATTCTAAGAGCAGGTCCCGGTCCAGGTCGGGCTCCCACTCACGGAGCAAGAGCCGGAGCCGAAGCCAGAGTAGGAGC
CGGAGCAAGAAGGAGAAAAGCAGGAGTCCCAGCAAGGACAAGAGCCGCAGCCGCAGTCGCAGCATCGGCAAGAGCCGAAG
CAAAAGCAAAGACCAAGCTGAAGAGAAGATCCAAAACAATGACAATGCTGGGAAACCCAAGAGCCGGAGTCCTAGCAGGC
ATAAAAGTAAGAGCAAAAGTCGGAGCAGGAGTCAGGAGAGGAGAGTGGAGGAGGAGAAGCGAGGGAGTATGAGCAGGGGC
AGGAGCCAGGAGGAGGGCAGGGGCCAGGAGAAGAGCCTCCGCCAGAGTCGGAGCCGGAGCAGGAGCAAAGGGGGTAGCAG
GAGCCGGAGTAGGAGCCACAGCAAGAGCAAGGACAAGAGGAAGGGCAGGAAGAGAAGCAGGGAGGAGAGCCGCAGCCGCA
GCCGCAGCCGCAGCAAGAGTGAGAGGAGCAGAAAGCGAGGCAGCAAGCGAGACAGCAAGACGGGCAGCAGCAAGAAGAAG
AAGAAGGAAGACACTGACCGCTCGCAGTCCAGATCACCGTCCCGCTCTGTTTCAAAGGAGCGGGACCATGTCAAGTCTGA
ATCCAGCCAGAGGGAAGGCCGAGGGGAGAGTGAGAATGCTGGCACCAATCAGGAGACCCGGTCTAGGTCGAGATCCAATT
CCAAATCGAAGCCAAACCTTCCATCAGAATCACGCTCCAGATCAAAGTCAGCTTCAAAAACCCGATCTCGGTCCAAGTCA
CGATCCAGGTCTGCTTCCAGATCACCCTCCCGGTCTAGATCTAGGTCCCACTCAAGGTCCTAA
ATGCCGCGGGTGTATATCGGCCGCCTGAGCTACCAGGCCCGGGAGCGCGATGTGGAGCGCTTCTTTAAGGGCTACGGGAA
GATCCTGGAGGTGGATCTGAAGAACGGATATGGTTTTGTGGAGTTTGATGATCTGCGTGATGCAGATGATGCTGTTTATG
AACTGAATGGCAAAGACCTTTGTGGTGAGCGAGTAATTGTTGAGCATGCCCGTGGCCCACGGCGAGATGGCAGTTACGGT
TCTGGACGCAGTGGATATGGTTATAGAAGAAGTGGCCGAGATAAATATGGCCCTCCTACTCGCACAGAGTACAGGCTTAT
TGTGGAGAATTTGTCAAGTCGGTGCAGCTGGCAAGACCTAAAGGATTATATGCGTCAGGCAGGAGAAGTGACTTATGCAG
ATGCTCACAAGGGACGCAAAAATGAAGGAGTGATTGAATTTGTATCTTATTCTGATATGAAAAGAGCTTTAGAAAAGTTG
GATGGAACTGAAGTCAATGGCAGAAAAATCCGATTAGTTGAAGACAAACCAGGTTCCAGACGACGCCGGTCCTACTCCAG
GAGCCGGAGCCATTCAAGGTCTCGCTCTCGAAGCAGACATTCCCGTAAGAGCAGAAGCCGAAGTGGAAGCAGCAAAAGCA
GTCATTCTAAGAGCAGGTCCCGGTCCAGGTCGGGCTCCCACTCACGGAGCAAGAGCCGGAGCCGAAGCCAGAGTAGGAGC
CGGAGCAAGAAGGAGAAAAGCAGGAGTCCCAGCAAGGACAAGAGCCGCAGCCGCAGTCGCAGCATCGGCAAGAGCCGAAG
CAAAAGCAAAGACCAAGCTGAAGAGAAGATCCAAAACAATGACAATGCTGGGAAACCCAAGAGCCGGAGTCCTAGCAGGC
ATAAAAGTAAGAGCAAAAGTCGGAGCAGGAGTCAGGAGAGGAGAGTGGAGGAGGAGAAGCGAGGGAGTATGAGCAGGGGC
AGGAGCCAGGAGGAGGGCAGGGGCCAGGAGAAGAGCCTCCGCCAGAGTCGGAGCCGGAGCAGGAGCAAAGGGGGTAGCAG
GAGCCGGAGTAGGAGCCACAGCAAGAGCAAGGACAAGAGGAAGGGCAGGAAGAGAAGCAGGGAGGAGAGCCGCAGCCGCA
GCCGCAGCCGCAGCAAGAGTGAGAGGAGCAGAAAGCGAGGCAGCAAGCGAGACAGCAAGACGGGCAGCAGCAAGAAGAAG
AAGAAGGAAGACACTGACCGCTCGCAGTCCAGATCACCGTCCCGCTCTGTTTCAAAGGAGCGGGACCATGTCAAGTCTGA
ATCCAGCCAGAGGGAAGGCCGAGGGGAGAGTGAGAATGCTGGCACCAATCAGGAGACCCGGTCTAGGTCGAGATCCAATT
CCAAATCGAAGCCAAACCTTCCATCAGAATCACGCTCCAGATCAAAGTCAGCTTCAAAAACCCGATCTCGGTCCAAGTCA
CGATCCAGGTCTGCTTCCAGATCACCCTCCCGGTCTAGATCTAGGTCCCACTCAAGGTCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 16 .91 RPM |
| SRP051959_skeletal_muscle | 10 .70 RPM |
| SRP051959_lymph_node | 19 .36 RPM |
| SRP051959_lung | 23 .51 RPM |
| SRP051959_liver | 13 .02 RPM |
| SRP051959_kidney | 11 .78 RPM |
| SRP051959_heart | 16 .03 RPM |
| SRP051959_colon | 11 .94 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013858 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000001187 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016062 | other_paralog | 5 retrogenes | |
| Microcebus murinus | ENSMICG00000008965 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015515 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3688 | 92.73 | 67.16 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3883 | 84.47 | 73.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3899 | 78.75 | 73.64 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009971 retrocopies