RetrogeneDB ID: | retro_cjac_1035 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:49727042..49727533(-) | ||
Located in intron of: | ENSCJAG00000001291 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000016062 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MHRDSCP-LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR |
MHRDSCP.LDCKVYVGNL.NNGNKTELE..FGYYGPL.SVWVARNPPGFAFVEFEDPRDAADAVRELDGR | |
Retrocopy | MHRDSCP<LDCKVYVGNLENNGNKTELEWVFGYYGPL*SVWVARNPPGFAFVEFEDPRDAADAVRELDGR |
Parental | TLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSL |
.LC.CRVRVELSNGEKRSRN.GP.P.WGRRPRDDY.RRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSL | |
Retrocopy | ILCDCRVRVELSNGEKRSRNHGPRPFWGRRPRDDYCRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSL |
Parental | SRERNHKPSRSFSRSRSRSRSNERK |
S.ERNHKPSRSFSRSRSRSRSNERK | |
Retrocopy | SWERNHKPSRSFSRSRSRSRSNERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .95 RPM | 54 .80 RPM |
SRP051959_heart | 0 .51 RPM | 44 .43 RPM |
SRP051959_kidney | 1 .02 RPM | 56 .24 RPM |
SRP051959_liver | 1 .54 RPM | 33 .10 RPM |
SRP051959_lung | 0 .47 RPM | 56 .20 RPM |
SRP051959_lymph_node | 1 .05 RPM | 68 .08 RPM |
SRP051959_skeletal_muscle | 0 .26 RPM | 38 .65 RPM |
SRP051959_spleen | 0 .92 RPM | 58 .24 RPM |