RetrogeneDB ID: | retro_cjac_1969 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:154488934..154489426(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000016062 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAV.ELDGRT | |
Retrocopy | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVQELDGRT |
Parental | LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS |
LCGCRVRVELSNGEKRSRNRGPP.SWGRRP.DDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS | |
Retrocopy | LCGCRVRVELSNGEKRSRNRGPPLSWGRRP*DDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS |
Parental | RERNHKPSRSFSRSRSRSRSNERK |
RERNHKPSRSFSRSRSRSRSNERK | |
Retrocopy | RERNHKPSRSFSRSRSRSRSNERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .18 RPM | 54 .80 RPM |
SRP051959_heart | 0 .12 RPM | 44 .43 RPM |
SRP051959_kidney | 0 .16 RPM | 56 .24 RPM |
SRP051959_liver | 0 .24 RPM | 33 .10 RPM |
SRP051959_lung | 0 .15 RPM | 56 .20 RPM |
SRP051959_lymph_node | 0 .11 RPM | 68 .08 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 38 .65 RPM |
SRP051959_spleen | 0 .08 RPM | 58 .24 RPM |