Parental gene:

ENSCJAG00000016062

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:37571155..37579975(+)


>ENSCJAG00000016062
ATGCATCGTGATTCCTGTCCCTTGGACTGTAAGGTTTATGTAGGCAATCTTGGAAACAATGGCAACAAGACCGAATTGGA
ACGGGCTTTTGGCTACTATGGACCACTCCGAAGTGTGTGGGTTGCTAGAAACCCTCCCGGCTTTGCTTTTGTTGAGTTTG
AAGATCCCCGAGATGCAGCTGATGCTGTCCGAGAGCTAGATGGAAGAACACTATGTGGCTGCCGTGTAAGAGTGGAACTG
TCGAATGGTGAAAAAAGAAGTAGAAATCGTGGCCCACCTCCGTCTTGGGGCCGTCGTCCTCGAGATGATTATCGGTATGT
GAGTTGTGCTGAGTGTTGGCTTTTGTCTGTAGGTCACTGTTCATTTTACTGCTGGTTAAAATCTCCAAGAAGGAGAAGCT
TTTCTCGCAGCCGGAGCAGGTCCCTTTCTAGAGATAGGAGAAGAGAGAGATCGCTGTCTCGGGAGAGAAATCACAAGCCG
TCCCGATCCTTCTCTAGGTCTCGTAGCCGTTCTAGGAGTATGTACAGAAAATTCAAGTTTTGTTTGAGACTTCATAAGCT
TGGTGCATTT

Library Parental gene expression (RPM)
SRP051959_colon 54 .80 RPM
SRP051959_heart 44 .43 RPM
SRP051959_kidney 56 .24 RPM
SRP051959_liver 33 .10 RPM
SRP051959_lung 56 .20 RPM
SRP051959_lymph_node 68 .08 RPM
SRP051959_skeletal_muscle 38 .65 RPM
SRP051959_spleen 58 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000040006 ortholog_one2many 5 retrogenes
retro_btau_1176, retro_btau_1442, retro_btau_1445, retro_btau_1665, retro_btau_1813,
Callithrix jacchus ENSCJAG00000001187 other_paralog 1 retrogene
retro_cjac_442,
Callithrix jacchus ENSCJAG00000009971 other_paralog 3 retrogenes
retro_cjac_3688, retro_cjac_3883, retro_cjac_3899,
Dasypus novemcinctus ENSDNOG00000000421 possible_ortholog 9 retrogenes
retro_dnov_1326, retro_dnov_1513, retro_dnov_1702, retro_dnov_1951, retro_dnov_2153, retro_dnov_2328, retro_dnov_2491, retro_dnov_569, retro_dnov_784,
Equus caballus ENSECAG00000018741 possible_ortholog 2 retrogenes
retro_ecab_178, retro_ecab_961,
Echinops telfairi ENSETEG00000010117 possible_ortholog 2 retrogenes
retro_etel_2064, retro_etel_445,
Homo sapiens ENSG00000112081 ortholog_one2many 4 retrogenes
retro_hsap_2140, retro_hsap_2299, retro_hsap_2304, retro_hsap_757,
Gorilla gorilla ENSGGOG00000017186 possible_ortholog 5 retrogenes
retro_ggor_1654, retro_ggor_1706, retro_ggor_2030, retro_ggor_2746, retro_ggor_630,
Loxodonta africana ENSLAFG00000018193 ortholog_one2many 2 retrogenes
retro_lafr_1219, retro_lafr_80,
Microcebus murinus ENSMICG00000004674 ortholog_one2many 5 retrogenes
retro_mmur_1090, retro_mmur_160, retro_mmur_287, retro_mmur_710, retro_mmur_916,
Myotis lucifugus ENSMLUG00000010671 ortholog_many2many 6 retrogenes
retro_mluc_1205, retro_mluc_1312, retro_mluc_1554, retro_mluc_2283, retro_mluc_278, retro_mluc_51,
Macaca mulatta ENSMMUG00000014306 possible_ortholog 4 retrogenes
retro_mmul_1007, retro_mmul_1042, retro_mmul_1642, retro_mmul_2359,
Mustela putorius furo ENSMPUG00000014215 ortholog_one2many 1 retrogene
retro_mputfur_613,
Mus musculus ENSMUSG00000071172 ortholog_one2many 9 retrogenes
retro_mmus_100, retro_mmus_1347, retro_mmus_1749, retro_mmus_2294, retro_mmus_2337, retro_mmus_2433, retro_mmus_2654, retro_mmus_2933, retro_mmus_3629,
Oryctolagus cuniculus ENSOCUG00000006684 possible_ortholog 3 retrogenes
retro_ocun_415, retro_ocun_772, retro_ocun_970,
Otolemur garnettii ENSOGAG00000000502 possible_ortholog 6 retrogenes
retro_ogar_1850, retro_ogar_1959, retro_ogar_2131, retro_ogar_2783, retro_ogar_597, retro_ogar_803,
Ochotona princeps ENSOPRG00000006006 ortholog_one2many 3 retrogenes
retro_opri_1037, retro_opri_158, retro_opri_545,
Pan troglodytes ENSPTRG00000018106 possible_ortholog 4 retrogenes
retro_ptro_1566, retro_ptro_1628, retro_ptro_2776, retro_ptro_533,
Rattus norvegicus ENSRNOG00000000520 ortholog_one2many 11 retrogenes
retro_rnor_1010, retro_rnor_1283, retro_rnor_1321, retro_rnor_1339, retro_rnor_1647, retro_rnor_1697, retro_rnor_1889, retro_rnor_2424, retro_rnor_634, retro_rnor_728, retro_rnor_790,
Sus scrofa ENSSSCG00000001564 ortholog_one2many 1 retrogene
retro_sscr_1038,
Ictidomys tridecemlineatus ENSSTOG00000014280 ortholog_one2many 5 retrogenes
retro_itri_123, retro_itri_502, retro_itri_664, retro_itri_857, retro_itri_901,
Tarsius syrichta ENSTSYG00000013498 ortholog_one2many 3 retrogenes
retro_tsyr_1867, retro_tsyr_2163, retro_tsyr_848,
Tursiops truncatus ENSTTRG00000013447 ortholog_one2many 11 retrogenes
retro_ttru_105, retro_ttru_1195, retro_ttru_1577, retro_ttru_1628, retro_ttru_1639, retro_ttru_1653, retro_ttru_1677, retro_ttru_1731, retro_ttru_1892, retro_ttru_610, retro_ttru_916,
Vicugna pacos ENSVPAG00000005481 ortholog_one2many 1 retrogene
retro_vpac_541,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_620 92.12 100.00
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2. retro_cjac_746 84.13 76.83
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3. retro_cjac_1035 92.73 100.00
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4. retro_cjac_1969 98.17 100.00
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5. retro_cjac_2006 88.24 81.71
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Download FASTA sequences of all ENSCJAG00000016062 retrocopies