Parental gene:

SLC5A1, ENSCJAG00000011369

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:194880230..194957663(+)


>ENSCJAG00000011369
ATGGACAGTAGCACCTGGAGCCCCGCCACCGCCGCTGCCGTCACCCGGCCTGTTGAGGCCCACGAGCTCATTCGCAATGC
AGCCGACATCTCTGTCATCGTCATCTACTTCGTGGTGGTGATGGCCGTTGGACTGTGGGCTATGTTTTCCACCAATCGTG
GGACTGTTGGAGGCTTCTTCCTTGCAGGCCGAAGTATGGTGTGGTGGCCGATTGGAGCCTCCCTCTTCGCTAGTAACATT
GGAAGTGGCCACTTTGTGGGGCTGGCTGGGACAGGAGCAGCTTCAGGCATTGCTATTGGAGGCTTTGAATGGAACGCCCT
GGTTTTGGTGGTTGTGCTGGGCTGGCTGTTTGTCCCCATCTATATTAAGGCTGGGGTGGTGACGATGCCAGAGTACCTGC
GGAAGCGGTTTGGAGGCCAGCGGATCCAGGTCTACCTTTCTGTTCTGTCCCTGCTGCTCTACATTTTTACCAAGATCTCG
GCAGACATCTTCTCGGGGGCCATATTCATCAATCTGGCCTTAGGCCTGAATCTGTATTTGGCCATCTTTCTCTTATTGGC
AATCACTGCCCTTTACACAATTACAGGGGGACTGGCAGCGGTGATTTACACGGACACCTTGCAGACGGTGATCATGCTGG
TGGGATCTTTAATCCTGACTGGGTTTGCTTTTCATGAAGTGGGAGGCTATGACGCCTTCATGGAAAAATACATGAATGCC
ACTCCAACTGTGATTTCTGATGGTAACACCACCATTAAGGAAGAATGCTACCTTCCGAGGGCCGACTCCTTCCACATCTT
CCGAGATCCCCTCAAGGGAGACCTGCCATGGCCTGGGCTCATCTTTGGGATGTCCATCCTTGCCCTGTGGTACTGGTGCA
CAGATCAGGTCATTGTGCAGCGCTGCCTCTCAGCCAAGAACATGTCTCATGTGAAGGCTGGCTGCACCCTGTGTGGGTAC
CTGAAGCTGCTGCCCATGTTCATCATGGTGATGCCAGGAATGATCAGCCGCATTCTGTACACAGACAAAATTGCCTGTGT
TGTCCCTTCAGAATGTGAGAAATATTGCGGTACCAAGGTTGGCTGTACCAACATCGCCTATCCAACCTTGGTGGTGGAGC
TCATGCCCAATGGATTGCGAGGCCTGATGCTGTCGGTCATGTTGGCCTCTCTCATGAGCTCCCTGACCTCCATCTTCAAC
AGTGCCAGCACCCTCTTCACCATGGACATCTACACCAAGGTCCGCAAGGGAGCATCTGAGAAAGAGCTCATGATTGCTGG
AAGGTTGTTTATCCTGTTGCTGATTGGAATCAGCATTGCCTGGGTGCCCATTGTGCAATCAGCACAAAGTGGGCAGCTCT
TCGATTACATCCAGTCCATCACCAGTTATTTGGGACCACCCATTGCAGCTGTCTTCCTGCTTGGTATTTTCTGGAAGAGA
GTCAATGAGCCGGGAGCCTTTTGGGGACTGATCCTAGGATTTCTGATTGGGGTTTCACGTATGATTACTGAGTTTGCCTA
TGGAACCGGGAGCTGCATGGAGCCCAGCAACTGTCCCACGATTATCTGTGGGGTGCACTACTTGTACTTTGCTATTATCC
TCTTCGTCATTTCTGTCATCAGTATCGTGGTCATCTCCCTCCTCACCAAGCCCATTCCAGATGTGCATCTTTATCGTCTG
TGTTGGAGTCTGCGCAACAGCAAAGAGGAGCGTATTGACCTGGATGTGGAAGAGGAGAACATCAAAGAAGACCCTAAGGA
GACCATTGAAATAGACACAGAAGTTCCTGAGGAGAGGAAAGGATTCTTCAGGAGAGCCTATGATCTGTTTTGTGGGCTGG
AGCAGCAGAGTGCACCCAAGATGACCGAGGAAGAGGAGAAAGCCATGAAGATGAAGATGACAGACACCTCTGAAAAGCCT
TTGTGGAGGACAGTGGTGAACATCAATGGCATCATCCTGCTGACCGTGGCTGTCTTTTGCCATGCATATTTTGCCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .00 RPM
SRP051959_skeletal_muscle 0 .00 RPM
SRP051959_lymph_node 0 .00 RPM
SRP051959_lung 0 .07 RPM
SRP051959_liver 0 .24 RPM
SRP051959_kidney 5 .08 RPM
SRP051959_heart 0 .04 RPM
SRP051959_colon 23 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000007944 ortholog_one2many 1 retrogene
retro_apla_5,
Choloepus hoffmanni ENSCHOG00000005940 ortholog_one2one 1 retrogene
retro_chof_2,
Ficedula albicollis ENSFALG00000007384 ortholog_one2one 1 retrogene
retro_falb_29,
Homo sapiens ENSG00000100170 ortholog_one2one 1 retrogene
retro_hsap_105,
Gallus gallus ENSGALG00000006728 ortholog_one2one 1 retrogene
retro_ggal_2,
Monodelphis domestica ENSMODG00000009915 ortholog_one2one 1 retrogene
retro_mdom_1324,
Mustela putorius furo ENSMPUG00000012749 ortholog_one2one 1 retrogene
retro_mputfur_837,
Oryctolagus cuniculus ENSOCUG00000017569 ortholog_one2one 1 retrogene
retro_ocun_1633,
Otolemur garnettii ENSOGAG00000003370 ortholog_one2one 1 retrogene
retro_ogar_2513,
Ochotona princeps ENSOPRG00000010458 ortholog_one2one 1 retrogene
retro_opri_6,
Procavia capensis ENSPCAG00000015157 ortholog_one2one 1 retrogene
retro_pcap_3,
Rattus norvegicus ENSRNOG00000017775 ortholog_one2one 1 retrogene
retro_rnor_794,
Ictidomys tridecemlineatus ENSSTOG00000006386 ortholog_one2one 1 retrogene
retro_itri_13,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2033 55.02 73.98
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Download FASTA sequences of all ENSCJAG00000011369 retrocopies