RetrogeneDB ID: retro_mputfur_837

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896955.1:9420264..9421860(+)
• Located in intron of: ENSMPUG00000001330

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC5A1
• Ensembl ID: ENSMPUG00000012749
• Aliases: None
• Description: solute carrier family 5 (sodium/glucose cotransporter), member 1 [Source:HGNC Symbol;Acc:11036]

Sequence

>retro_mputfur_837
GTACTGGAGACAGCAGACATTGCCATAGTGGCCCTGTATTTTATCCTGGTCATGTGCATTGGTTTTTTTGCCATGTGGAA
ATCTAATAGAAGCACCGTGAGTGGATACTTCCTGGCGGGGCGCTCTATGACCTGGGTAGCGATTGGTGCCTCTCTGTTTG
TGAGCAATATTGGCAGTGAGCACTTCATTGGGCTGGCAGGATCTGGAGCTGCAAGCGGATTTGCAGTGGGCGCATGGGAG
TTCAATGCCTTGCTGCTTTTGCAACTTCTGGGATGGGTTTTCATCCCGATTTACATCCGGTCAGGGGTATACACCATGCC
TGAATACTTGTCCAAGCGATTTGGTGGCCATAGGATTCAGGTCTATTTTGCAGCCTTGTCTCTGATTCTCTATATCTTCA
CCAAGCTCTCAGTGGATCTGTATTCGGGTGCCCTCTTTATCCAGGAGTCTTTGGGTTGGAACCTCTATGTGTCTGTCATC
CTGCTCATTGGCATGACTGCTTTGCTGACTGTCACCGGAGGCCTTGTTGCAGTGATCTACACAGACACGCTACAGGCTCT
GCTTATGATCGTTGGGGCGCTCACGCTTATGATTATTAGCATGATGGAGATTGGCGGGTTTGAGGAAGTTAAGAGAAGGT
ACATGTTGGCCTCACCCAATGTTACTTCCATCTTGTTGACATACAACCTTTCCAACACAAATTCTTGTAATGTCCACCCT
AAGAAAGACGCACTGAAAATGTTACGGAATCCGACAGATGAAGACGTTCCCTGGCCTGGATTCGTGCTTGGGCAGACCCC
GGCTTCCGTGTGGTACTGGTGCGCTGACCAAGTCATCGTGCAGAGAGTCTTAGCGGCTAAAAACATTGCTCATGCCAAAG
GCTCTACGCTTATGGCTGGCTTCCTGAAGCTTCTGCCCATGTTTATCATAGTTGTCCCAGGAATGATATCCAGAATACTG
TTTGCCGATGATATAGCTTGCATCAACCCAGAGCACTGCATGCAAGTGTGTGGAAGTCGAGCTGGGTGCTCTAACATTGC
TTACCCACGCCTGGTGATGAAGCTGGTTCCCGTGGGACTCCGCGGCCTAATGATGGCGGTGATGATTGCCGCTCTGATGA
GCGACTTGGACTCTATCTTTAACAGTGCCAGTACCATATTCACCCTCGATGTGTACAAACTCATGCGCAGGAGTGCGAGC
TCCCGGGAACTAATGATTGTGGGGAGGATATTTGTGGCTTTTATGGTGGTGATCAGCATCGCGTGGGTGCCCATCATCGT
GGAGATGCAAGGAGGCCAGATGTACCTTTACATCCAGGAGGTGGCGGACTACCTGACACCCCCAGTTGCGGCCCTGTTCC
TTCTGGCAATCTTCTGGAAGCGCTGCAACGAGCAAGGGGCTTTCTATGGTGGAATGGCTGGCTTTGTTCTTGGAGCGGTC
CGTTTGACACTGGCCTTTGCATACCGTGCCCCCGAATGTGACCAACCTGATAACAGGCCAGGCTTCATCAAAGACATCCA
TTACATGTACGTGGCCACCGCCCTGTTCTGGGTCACAGGACTCATTACTGTCATTGTTAGCCTCCTCACACCACCG

Alignment

ORF - retro_mputfur_837 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.82 %
• Parental protein coverage: 79.76 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IRNAADISVIVIYFVVVMAVGLWAMFSTNRGTVGGFFLAGRSMVWWPIGASLFASNIGSGHFVGLAGTGA
          ....ADI.....YF..VM..G..AM...NR.TV.G.FLAGRSM.W..IGASLF.SNIGS.HF.GLAG.GA
Retrocopy VLETADIAIVALYFILVMCIGFFAMWKSNRSTVSGYFLAGRSMTWVAIGASLFVSNIGSEHFIGLAGSGA

Parental  AAGIAMGGFEWNALIWVVVLGWVFVPIYIKAGVVTMPEYLKKRFGGKRIQIYLSILSLLLYIFTKISADI
          A.G.A.G..E.NAL.....LGWVF.PIYI..GV.TMPEYL.KRFGG.RIQ.Y...LSL.LYIFTK.S.D.
Retrocopy ASGFAVGAWEFNALLLLQLLGWVFIPIYIRSGVYTMPEYLSKRFGGHRIQVYFAALSLILYIFTKLSVDL

Parental  FSGAIFINMALGLDLYLAIFLLLAITGLYTITGGLAAVIYTDTLQTAIMLVGSFILTGFAFREVGGYDAF
          .SGA.FI...LG..LY....LL...T.L.T.TGGL.AVIYTDTLQ...M.VG...L......E.GG....
Retrocopy YSGALFIQESLGWNLYVSVILLIGMTALLTVTGGLVAVIYTDTLQALLMIVGALTLMIISMMEIGGFEEV

Parental  MKKYMKAIPTVVT---AENITIKEECYT-PRADSFHIFRDPLTGDLPWPGLIFGLSILALWYWCTDQVIV
          ...YM.A.P.V.......N......C...P..D.....R.P...D.PWPG...G......WYWC.DQVIV
Retrocopy KRRYMLASPNVTSILLTYNLSNTNSCNVHPKKDALKMLRNPTDEDVPWPGFVLGQTPASVWYWCADQVIV

Parental  QRCLSAKNMSHVKAGCILCGYMKLLPMFLMVMPGMISRILYTEKVACTVPSECKKYCGTEVGCTNVAYPT
          QR.L.AKN..H.K......G..KLLPMF..V.PGMISRIL.....AC..P..C...CG...GC.N.AYP.
Retrocopy QRVLAAKNIAHAKGSTLMAGFLKLLPMFIIVVPGMISRILFADDIACINPEHCMQVCGSRAGCSNIAYPR

Parental  LVVELMPDGLRGLMLSVMLASLMSSLTSIFNSASTLFTMDIYTKIRKGASEKELMIAGRLFILVLIGVSI
          LV..L.P.GLRGLM..VM.A.LMS.L.SIFNSAST.FT.D.Y...R..AS..ELMI.GR.F.......SI
Retrocopy LVMKLVPVGLRGLMMAVMIAALMSDLDSIFNSASTIFTLDVYKLMRRSASSRELMIVGRIFVAFMVVISI

Parental  AWVPIVQSAQSGQLFDYIQSITSYLGPPIAAVFLLAIFWKRANEPGAFWGLVIGFLVGVSRMVTEFAYGT
          AWVPI....Q.GQ...YIQ....YL.PP.AA.FLLAIFWKR.NE.GAF.G...GF..G..R....FAY..
Retrocopy AWVPIIVEMQGGQMYLYIQEVADYLTPPVAALFLLAIFWKRCNEQGAFYGGMAGFVLGAVRLTLAFAYRA

Parental  GSCMQPSNCPTIICGVHYLYFAIILFVISVIVIVVVSLFTKP
          ..C.QP.N.P..I...HY.Y.A..LF.......V.VSL.T.P
Retrocopy PECDQPDNRPGFIKDIHYMYVATALFWVTGLITVIVSLLTPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_837 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_837 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Anas platyrhynchos	ENSAPLG00000007944	1 retrocopy	retro_apla_5,
Choloepus hoffmanni	ENSCHOG00000005940	1 retrocopy	retro_chof_2,
Callithrix jacchus	ENSCJAG00000011369	1 retrocopy	retro_cjac_2033,
Ficedula albicollis	ENSFALG00000007384	1 retrocopy	retro_falb_29,
Homo sapiens	ENSG00000100170	1 retrocopy	retro_hsap_105,
Gallus gallus	ENSGALG00000006728	1 retrocopy	retro_ggal_2,
Monodelphis domestica	ENSMODG00000009915	1 retrocopy	retro_mdom_1324,
Mustela putorius furo	ENSMPUG00000012749	1 retrocopy	retro_mputfur_837 ,
Oryctolagus cuniculus	ENSOCUG00000017569	1 retrocopy	retro_ocun_1633,
Otolemur garnettii	ENSOGAG00000003370	1 retrocopy	retro_ogar_2513,
Ochotona princeps	ENSOPRG00000010458	1 retrocopy	retro_opri_6,
Procavia capensis	ENSPCAG00000015157	1 retrocopy	retro_pcap_3,
Rattus norvegicus	ENSRNOG00000017775	1 retrocopy	retro_rnor_794,
Ictidomys tridecemlineatus	ENSSTOG00000006386	1 retrocopy	retro_itri_13,