Parental gene:

TCP1, ENSCJAG00000011792

Aliases:None
Description:T-complex protein 1 subunit alpha [Source:UniProtKB/TrEMBL;Acc:F6TE24]
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:160854223..160864780(-)


>ENSCJAG00000011792
ATGGAGGGGCCTTTGTCCGTGTTCGGGGACCGCAGCACTGGGGAGGCGATCCGATCCCAGAACGTTATGGCTGCAGCTTC
GATTGCCAATATTGTAAAAAGTTCTCTTGGTCCAGTTGGCTTGGATAAAATGTTGGTGGATGATATTGGTGATGTAACCA
TTACTAACGATGGTGCCACCATCCTGAAGTTACTGGAGGTAGAACATCCTGCAGCTAAAGTTCTTTGTGAGCTGGCTGAT
CTGCAAGACAAAGAAGTTGGAGATGGAACTACCTCAGTGGTTATTATTGCAGCAGAACTCCTAAAAAATGCAGATGAATT
AGTCAAACAGAAAATTCATCCCACATCAGTTATTAGTGGCTATCGACTTGCTTGCAAGGAAGCAGTGCGTTATATCAATG
AAAACCTAATTGTTAACACAGATGAACTAGGAAGAGATTGCCTGATCAATGCTGCTAAGACATCCATGTCTTCCAAAATC
ATTGGAATAAATGGTGATTTCTTTGCTAACATGGTAGTAGATGCTGTACTTGCTATTAAATACACAGATATAAGAGGCCA
GCCGCGCTATCCAGTCAACTCTGTTAATATTTTGAAAGCCCATGGGAGAAGTCAAACGGAGAGTATGCTGATCAGTGGCT
ATGCACTCAACTGTGTGGTAGGATCCCAGGGCATGCCCAAGAGAATTGTAAATGCAAAAATTGCTTGCCTTGACTTTAGC
CTGCAAAAAACAAAAATGAAGCTTGGTGTACAGGTGGTCATTACAGACCCTGAAAAACTGGACCAAATTAGACAGAGAGA
ATCAGATATCACCAAGGAGAGAATTCAGAAGATCCTGGCAACTGGTGCCAACGTTATTCTAACCACTGGTGGAATTGATG
ATATGTGTCTGAAGTATTTTGTGGAGGCTGGTGCTATGGCAGTTAGAAGAGTTTTAAAAAGGGACCTTAAACGCATTGCT
AAAGCTTCTGGAGCATCTATTCTGTCAACCCTGGCGAATCTGGAAGGTGAAGAAACTTTTGAAGCTGCAATGTTGGGACA
GGCAGAAGAAGTGGTCCAAGAGAGAATTTGTGATGATGAGCTGATCTTAATCAAAAACACTAAGGCTCGTACATCGGCAT
CGATTATCTTACGTGGTGCAAATGATTTCATGTGTGATGAGATGGAGCGCTCTTTACACGATGCCCTTTGTGTAGTGAAG
AGAGTTTTGGAGTCAAAATCTGTGGTTCCAGGTGGGGGTGCTGTAGAAGCAGCCCTGTCCATATATCTTGAAAACTATGC
AACCAGCATGGGGTCTCGGGAACAGCTTGCTATTGCAGAGTTTGCAAGATCACTTCTTGTTATTCCTAATACACTGGCAG
TTAATGCTGCCCAGGACTCCACAGATCTGGTTGCAAAATTAAGAGCTTTTCACAATGAGGCTCAGGTTAACCCAGAACGT
AAAAATCTAAAATGGATTGGTCTTGATTTGAGCAATGGTAAACCTCGAGACAACAAACAAGCAGGGGTGTTTGAACCAAC
CATAGTTAAAGTTAAGAGTTTGAAATTTGCAACAGAAGCTGCAATTACCATTCTTCGAATTGATGATCTTATTAAATTAC
ATCCAGAAAGTAAAGATGATAAACATGGAAGTTATGAAGATGCTGTTCACTCTGGAGCCCTTAATGATTGA

Library Parental gene expression (RPM)
SRP051959_colon 70 .76 RPM
SRP051959_heart 52 .67 RPM
SRP051959_kidney 56 .91 RPM
SRP051959_liver 71 .55 RPM
SRP051959_lung 42 .59 RPM
SRP051959_lymph_node 46 .21 RPM
SRP051959_skeletal_muscle 53 .24 RPM
SRP051959_spleen 46 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015405 ortholog_one2one 1 retrogene
retro_amel_828,
Equus caballus ENSECAG00000017953 ortholog_one2one 1 retrogene
retro_ecab_798,
Homo sapiens ENSG00000120438 ortholog_one2one 1 retrogene
retro_hsap_3722,
Gorilla gorilla ENSGGOG00000014063 ortholog_one2one 1 retrogene
retro_ggor_2514,
Microcebus murinus ENSMICG00000007998 ortholog_one2one 1 retrogene
retro_mmur_795,
Macaca mulatta ENSMMUG00000012846 ortholog_one2many 1 retrogene
retro_mmul_1696,
Oryctolagus cuniculus ENSOCUG00000013847 ortholog_one2one 1 retrogene
retro_ocun_1577,
Pongo abelii ENSPPYG00000017146 ortholog_one2one 1 retrogene
retro_pabe_3135,
Pan troglodytes ENSPTRG00000018760 ortholog_one2one 1 retrogene
retro_ptro_2617,
Pteropus vampyrus ENSPVAG00000005316 ortholog_one2one 1 retrogene
retro_pvam_522,
Sorex araneus ENSSARG00000002463 ortholog_one2one 1 retrogene
retro_sara_624,
Sarcophilus harrisii ENSSHAG00000015128 ortholog_one2many 1 retrogene
retro_shar_830,
Ictidomys tridecemlineatus ENSSTOG00000005572 ortholog_one2one 1 retrogene
retro_itri_1274,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1867 74.59 54.68
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2. retro_cjac_2193 96.42 100.00
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Download FASTA sequences of all ENSCJAG00000011792 retrocopies