Parental gene: | TCP1, ENSCJAG00000011792 |
| Aliases: | None |
| Description: | T-complex protein 1 subunit alpha [Source:UniProtKB/TrEMBL;Acc:F6TE24] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 4:160854223..160864780(-) |
>ENSCJAG00000011792
ATGGAGGGGCCTTTGTCCGTGTTCGGGGACCGCAGCACTGGGGAGGCGATCCGATCCCAGAACGTTATGGCTGCAGCTTC
GATTGCCAATATTGTAAAAAGTTCTCTTGGTCCAGTTGGCTTGGATAAAATGTTGGTGGATGATATTGGTGATGTAACCA
TTACTAACGATGGTGCCACCATCCTGAAGTTACTGGAGGTAGAACATCCTGCAGCTAAAGTTCTTTGTGAGCTGGCTGAT
CTGCAAGACAAAGAAGTTGGAGATGGAACTACCTCAGTGGTTATTATTGCAGCAGAACTCCTAAAAAATGCAGATGAATT
AGTCAAACAGAAAATTCATCCCACATCAGTTATTAGTGGCTATCGACTTGCTTGCAAGGAAGCAGTGCGTTATATCAATG
AAAACCTAATTGTTAACACAGATGAACTAGGAAGAGATTGCCTGATCAATGCTGCTAAGACATCCATGTCTTCCAAAATC
ATTGGAATAAATGGTGATTTCTTTGCTAACATGGTAGTAGATGCTGTACTTGCTATTAAATACACAGATATAAGAGGCCA
GCCGCGCTATCCAGTCAACTCTGTTAATATTTTGAAAGCCCATGGGAGAAGTCAAACGGAGAGTATGCTGATCAGTGGCT
ATGCACTCAACTGTGTGGTAGGATCCCAGGGCATGCCCAAGAGAATTGTAAATGCAAAAATTGCTTGCCTTGACTTTAGC
CTGCAAAAAACAAAAATGAAGCTTGGTGTACAGGTGGTCATTACAGACCCTGAAAAACTGGACCAAATTAGACAGAGAGA
ATCAGATATCACCAAGGAGAGAATTCAGAAGATCCTGGCAACTGGTGCCAACGTTATTCTAACCACTGGTGGAATTGATG
ATATGTGTCTGAAGTATTTTGTGGAGGCTGGTGCTATGGCAGTTAGAAGAGTTTTAAAAAGGGACCTTAAACGCATTGCT
AAAGCTTCTGGAGCATCTATTCTGTCAACCCTGGCGAATCTGGAAGGTGAAGAAACTTTTGAAGCTGCAATGTTGGGACA
GGCAGAAGAAGTGGTCCAAGAGAGAATTTGTGATGATGAGCTGATCTTAATCAAAAACACTAAGGCTCGTACATCGGCAT
CGATTATCTTACGTGGTGCAAATGATTTCATGTGTGATGAGATGGAGCGCTCTTTACACGATGCCCTTTGTGTAGTGAAG
AGAGTTTTGGAGTCAAAATCTGTGGTTCCAGGTGGGGGTGCTGTAGAAGCAGCCCTGTCCATATATCTTGAAAACTATGC
AACCAGCATGGGGTCTCGGGAACAGCTTGCTATTGCAGAGTTTGCAAGATCACTTCTTGTTATTCCTAATACACTGGCAG
TTAATGCTGCCCAGGACTCCACAGATCTGGTTGCAAAATTAAGAGCTTTTCACAATGAGGCTCAGGTTAACCCAGAACGT
AAAAATCTAAAATGGATTGGTCTTGATTTGAGCAATGGTAAACCTCGAGACAACAAACAAGCAGGGGTGTTTGAACCAAC
CATAGTTAAAGTTAAGAGTTTGAAATTTGCAACAGAAGCTGCAATTACCATTCTTCGAATTGATGATCTTATTAAATTAC
ATCCAGAAAGTAAAGATGATAAACATGGAAGTTATGAAGATGCTGTTCACTCTGGAGCCCTTAATGATTGA
ATGGAGGGGCCTTTGTCCGTGTTCGGGGACCGCAGCACTGGGGAGGCGATCCGATCCCAGAACGTTATGGCTGCAGCTTC
GATTGCCAATATTGTAAAAAGTTCTCTTGGTCCAGTTGGCTTGGATAAAATGTTGGTGGATGATATTGGTGATGTAACCA
TTACTAACGATGGTGCCACCATCCTGAAGTTACTGGAGGTAGAACATCCTGCAGCTAAAGTTCTTTGTGAGCTGGCTGAT
CTGCAAGACAAAGAAGTTGGAGATGGAACTACCTCAGTGGTTATTATTGCAGCAGAACTCCTAAAAAATGCAGATGAATT
AGTCAAACAGAAAATTCATCCCACATCAGTTATTAGTGGCTATCGACTTGCTTGCAAGGAAGCAGTGCGTTATATCAATG
AAAACCTAATTGTTAACACAGATGAACTAGGAAGAGATTGCCTGATCAATGCTGCTAAGACATCCATGTCTTCCAAAATC
ATTGGAATAAATGGTGATTTCTTTGCTAACATGGTAGTAGATGCTGTACTTGCTATTAAATACACAGATATAAGAGGCCA
GCCGCGCTATCCAGTCAACTCTGTTAATATTTTGAAAGCCCATGGGAGAAGTCAAACGGAGAGTATGCTGATCAGTGGCT
ATGCACTCAACTGTGTGGTAGGATCCCAGGGCATGCCCAAGAGAATTGTAAATGCAAAAATTGCTTGCCTTGACTTTAGC
CTGCAAAAAACAAAAATGAAGCTTGGTGTACAGGTGGTCATTACAGACCCTGAAAAACTGGACCAAATTAGACAGAGAGA
ATCAGATATCACCAAGGAGAGAATTCAGAAGATCCTGGCAACTGGTGCCAACGTTATTCTAACCACTGGTGGAATTGATG
ATATGTGTCTGAAGTATTTTGTGGAGGCTGGTGCTATGGCAGTTAGAAGAGTTTTAAAAAGGGACCTTAAACGCATTGCT
AAAGCTTCTGGAGCATCTATTCTGTCAACCCTGGCGAATCTGGAAGGTGAAGAAACTTTTGAAGCTGCAATGTTGGGACA
GGCAGAAGAAGTGGTCCAAGAGAGAATTTGTGATGATGAGCTGATCTTAATCAAAAACACTAAGGCTCGTACATCGGCAT
CGATTATCTTACGTGGTGCAAATGATTTCATGTGTGATGAGATGGAGCGCTCTTTACACGATGCCCTTTGTGTAGTGAAG
AGAGTTTTGGAGTCAAAATCTGTGGTTCCAGGTGGGGGTGCTGTAGAAGCAGCCCTGTCCATATATCTTGAAAACTATGC
AACCAGCATGGGGTCTCGGGAACAGCTTGCTATTGCAGAGTTTGCAAGATCACTTCTTGTTATTCCTAATACACTGGCAG
TTAATGCTGCCCAGGACTCCACAGATCTGGTTGCAAAATTAAGAGCTTTTCACAATGAGGCTCAGGTTAACCCAGAACGT
AAAAATCTAAAATGGATTGGTCTTGATTTGAGCAATGGTAAACCTCGAGACAACAAACAAGCAGGGGTGTTTGAACCAAC
CATAGTTAAAGTTAAGAGTTTGAAATTTGCAACAGAAGCTGCAATTACCATTCTTCGAATTGATGATCTTATTAAATTAC
ATCCAGAAAGTAAAGATGATAAACATGGAAGTTATGAAGATGCTGTTCACTCTGGAGCCCTTAATGATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 46 .16 RPM |
| SRP051959_skeletal_muscle | 53 .24 RPM |
| SRP051959_lymph_node | 46 .21 RPM |
| SRP051959_lung | 42 .59 RPM |
| SRP051959_liver | 71 .55 RPM |
| SRP051959_kidney | 56 .91 RPM |
| SRP051959_heart | 52 .67 RPM |
| SRP051959_colon | 70 .76 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015405 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000017953 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000120438 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000014063 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000007998 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000012846 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000013847 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000017146 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000018760 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000005316 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000002463 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000015128 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000005572 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1867 | 74.59 | 54.68 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2193 | 96.42 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000011792 retrocopies