Parental gene:

TCP1, ENSPPYG00000017146

Aliases:None
Description:t-complex 1 [Source:HGNC Symbol;Acc:11655]
Organism:Orangutan (Pongo abelii)
Coordinates:6:163273854..163285252(-)


>ENSPPYG00000017146
ATGGAGGGGCCGTTGTCCGTGTTCGGTGACCGCAGCACTGGGGAAGCGATCCGCTCCCAGAACGTTATGGCTGCAGCTTC
GATTGCCAATATTGTAAAAAGTTCTCTTGGTCCAGTTGGCTTGGATAAAATGTTGGTGGATGATATTGGTGATGTAACCA
TTACTAACGATGGTGCAACCATCCTGAAGTTACTGGAGGTAGAACATCCTGCAGCTAAAGTTCTTTGTGAGCTGGCTGAT
CTGCAAGACAAAGAAGTTGGAGATGGAACTACCTCAGTGGTTATTATTGCAGCAGAACTCCTAAAAAATGCAGATGAATT
AGTCAAACAGAAAATTCACCCCACATCAGTTATTAGTGGCTATCGACTTGCTTGCAAGGAAGCAGTGCGTTATATCAATG
AAAACCTAATTGTTAACACAGATGAACTGGGAAGAGATTGCCTGATTAATGCTGCTAAGACATCTATGTCTTCCAAAATC
ATTGGAATAAATGGTGATTTCTTTGCTAACATGGTAGTAGATGCTGTACTTGCTATTAAATACACAGACATAAGAGGCCA
GCCACGTTATCCCGTCAATTCTGTTAATATTTTGAAAGCCCATGGGAGAAGTCAAATGGAGAGTATGCTCATCAGTGGCT
ATGCACTTAACTGTGTGGTGGGATCCCAGGGCATGCCCAAGAGAATCGTAAATGCAAAAATTGCTTGCCTTGACTTTAGC
CTGCAAAAAACAAAAATGAAGCTTGGTGTACAGGTGGTCATTACAGACCCTGAAAAACTGGACCAAATTAGACAGAGAGA
ATCAGATATCACCAAGGAGAGAATTCAGAAGATCCTGACAACTGGTGCCAATGTTATTCTAACCACTGGTGGAATTGATG
ATATGTGTCTGAAGTATTTTGTGGAGGCTGGTGCTATGGCAGTTAGAAGAGTTTTAAAAAGGGACCTTAAACGCATTGCT
AAAGCTTCTGGAGCAACTATTCTGTCAACCCTGGCCAATTTGGAAGGTGAAGAAACTTTTGAAGCTGCAATGTTGGGACA
GGCAGAAGAAGTGGTACAGGAGAGAATTTGTGATGATGAGCTGATCTTAATCAAAAATACTAAGGCTCGTACATCTGCAT
CGATTATCTTACGTGGGGCAAATGATTTCATGTGTGATGAGATGGAGCGCTCTTTACATGATGCACTTTGTGTAGTGAAG
AGAGTTTTGGAGTCAAAATCTGTGGTTCCCGGTGGGGGTGCTGTAGAAGCAGCCCTTTCCATATACCTTGAGAACTATGC
AACCAGCATGGGATCTCGGGAACAGCTTGCTATTGCAGAGTTTGCAAGATCACTTCTTGTTATTCCCAATACACTAGCAG
TTAATGCTGCCCAGGACTCCACAGATCTGGTTGCAAAATTAAGAGCTTTTCATAATGAGGCTCAGGTTAACCCAGAACGT
AAAAATCTAAAATGGATTGGTCTTGATTTGAGCAATGGTAAACCTCGAGACAACAAACAAGCAGGGGTGTTTGAACCAAC
CATAGTTAAAGTTAAGAGTTTGAAATTTGCAACAGAAGCTGCAATTACCATTCTTCGAATTGATGATCTTATTAAATTAC
ATCCAGAAAGTAAAGATGATAAACATGGAAGTTATGAAGATGCTGTTCACTCTGGAGCCCTTAATGATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 39 .92 RPM
SRP007412_cerebellum 37 .45 RPM
SRP007412_heart 19 .81 RPM
SRP007412_kidney 20 .15 RPM
SRP007412_liver 15 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015405 ortholog_one2one 1 retrogene
retro_amel_828,
Callithrix jacchus ENSCJAG00000011792 ortholog_one2one 2 retrogenes
retro_cjac_1867, retro_cjac_2193,
Equus caballus ENSECAG00000017953 ortholog_one2one 1 retrogene
retro_ecab_798,
Homo sapiens ENSG00000120438 ortholog_one2one 1 retrogene
retro_hsap_3722,
Gorilla gorilla ENSGGOG00000014063 ortholog_one2one 1 retrogene
retro_ggor_2514,
Microcebus murinus ENSMICG00000007998 ortholog_one2one 1 retrogene
retro_mmur_795,
Macaca mulatta ENSMMUG00000012846 ortholog_one2many 1 retrogene
retro_mmul_1696,
Oryctolagus cuniculus ENSOCUG00000013847 ortholog_one2one 1 retrogene
retro_ocun_1577,
Pan troglodytes ENSPTRG00000018760 ortholog_one2one 1 retrogene
retro_ptro_2617,
Pteropus vampyrus ENSPVAG00000005316 ortholog_one2one 1 retrogene
retro_pvam_522,
Sorex araneus ENSSARG00000002463 ortholog_one2one 1 retrogene
retro_sara_624,
Sarcophilus harrisii ENSSHAG00000015128 ortholog_one2many 1 retrogene
retro_shar_830,
Ictidomys tridecemlineatus ENSSTOG00000005572 ortholog_one2one 1 retrogene
retro_itri_1274,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3135 91.06 54.14
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Download FASTA sequences of all ENSPPYG00000017146 retrocopies