Parental gene:

TCP1, ENSECAG00000017953

Aliases:None
Description:t-complex 1 [Source:HGNC Symbol;Acc:11655]
Organism:Horse (Equus caballus)
Coordinates:31:2122902..2132458(-)


>ENSECAG00000017953
GCGAAGATGGAGGGGCCGCTGTCCGTGTTTGGGGACCGCAGCACCGGGGAGGCCATCCGCTCCCAGAACGTTATGGCTGC
AGCTTCTATTGCCAATATTGTAAAAAGTTCTCTTGGTCCAGTTGGCTTGGATAAAATGTTGGTGGATGATATTGGTGATG
TAACCATTACTAATGATGGTGCAACCATCCTGAAGTTGCTGGAGGTAGAGCATCCTGCAGCTAAAGTTCTTTGTGAGCTA
GCTGACCTGCAAGACAAAGAAGTGGGAGATGGAACTACCTCCGTGGTTATTATTGCAGCAGAACTTCTAAAAAATGCCGA
TGAACTCGTCAAACAGAAAATTCATCCCACATCAGTTATTAGTGGCTATCGACTTGCTTGCAAGGAAGCAGTGCGTTATA
TCAGTGAGAATCTAATTATTAACACAGATGAACTTGGAAGAGATTGCCTCATTAATGCTGCTAAGACGTCGATGTCTTCC
AAAATCATTGGAATAAATGGTGATTTCTTCGCTAATATGGTAGTAGATGCTGTGCTTGCTATTAAATACACAGATATAAG
AGGCCAGCCTCGCTATCCAGTCAATTCTATTAACGTCCTGAAAGCCCATGGGAGGAGTCAGATGGAGAGTATGCTCGTCA
ATGGCTATGCGCTCAACTGTGTGGTGGGAGCCCAGGGCATGCCCAAGAGAATAGTTAATGCAAAAATTGCTTGCCTTGAC
TTCAGCCTGCAGAAAACAAAAATGAAGCTTGGTGTACAGGTGGTTATTACAGACCCTGAAAAACTGGACCAGATTAGACA
GAGAGAATCAGATATCACCAAGGAGCGAATCCAGAAGATCCTGGCAACTGGGGCCAACGTTATTCTCACCACTGGTGGAA
TTGATGACATGTGTCTGAAGTATTTTGTGGAGACTGGTGCCATGGCAGTTAGAAGAGTTTTAAAAAGGGACCTTAAACGC
ATTGCTAAAGCTTCTGGAGCAACTATTCTGTCAACCCTGGCCAATTTGGAAGGTGAAGAAACTTTTGAAGCTTCAATGTT
GGGACAAGCAGAAGAGGTGGTGCAGGAGAGAATTTGTGATGATGAGCTCATCTTGATCAAAAACACTAAAGCTCGTACAT
CTGCATCAGTTATCTTACGTGGGGCGAATGATTTCATGTGTGATGAGATGGAGCGCTCTTTACATGATGCACTTTGTGTA
GTGAAGAGAGTTTTGGAGTCAAAATCAGTGGTTCCGGGTGGGGGTGCTGTAGAAGCAGCCCTGTCCATATATCTTGAAAA
CTACGCAACCAGCATGGGGTCTCGGGAACAGCTTGCTATTGCCGAGTTTGCAAGATCTCTTCTTGTCATTCCTAATACGC
TGGCAGTTAATGCTGCCCAAGACTCCACAGATCTGGTTGCAAAGTTAAGAGCTTTTCATAATGAGGCTCAGGTTAACCCA
GAACGCAAAAATCTAAAATGGATTGGTCTTGATTTGGTCAATGGTAAACCGCGAGACAACAAGCAAGCAGGGGTGTTTGA
ACCTACCATAGTTAAAGTTAAGAGTTTGAAATTTGCCACGGAAGCTGCAATTACAATTCTTCGAATTGATGATCTCATTA
AATTACACCCAGAAAGCAAAGATGATAAGCATGGAGGTTATGAAGATGCTGTTCACTCGGGAGCCCTTGATGGCTGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 47 .34 RPM
SRP021940_cerebellum 102 .05 RPM
SRP021940_embryo 126 .92 RPM
SRP021940_placental_villous 75 .73 RPM
SRP021940_synovial_membrane 50 .98 RPM
SRP021940_testis 376 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015405 ortholog_one2one 1 retrogene
retro_amel_828,
Callithrix jacchus ENSCJAG00000011792 ortholog_one2one 2 retrogenes
retro_cjac_1867, retro_cjac_2193,
Homo sapiens ENSG00000120438 ortholog_one2one 1 retrogene
retro_hsap_3722,
Gorilla gorilla ENSGGOG00000014063 ortholog_one2one 1 retrogene
retro_ggor_2514,
Microcebus murinus ENSMICG00000007998 ortholog_one2one 1 retrogene
retro_mmur_795,
Macaca mulatta ENSMMUG00000012846 ortholog_one2many 1 retrogene
retro_mmul_1696,
Oryctolagus cuniculus ENSOCUG00000013847 ortholog_one2one 1 retrogene
retro_ocun_1577,
Pongo abelii ENSPPYG00000017146 ortholog_one2one 1 retrogene
retro_pabe_3135,
Pan troglodytes ENSPTRG00000018760 ortholog_one2one 1 retrogene
retro_ptro_2617,
Pteropus vampyrus ENSPVAG00000005316 ortholog_one2one 1 retrogene
retro_pvam_522,
Rattus norvegicus ENSRNOG00000014160 ortholog_one2one 1 retrogene
retro_rnor_2091,
Sorex araneus ENSSARG00000002463 ortholog_one2one 1 retrogene
retro_sara_624,
Sarcophilus harrisii ENSSHAG00000015128 ortholog_one2many 1 retrogene
retro_shar_830,
Ictidomys tridecemlineatus ENSSTOG00000005572 ortholog_one2one 1 retrogene
retro_itri_1274,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_798 74.01 53.94
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Download FASTA sequences of all ENSECAG00000017953 retrocopies