Parental gene:

MMU.1934, ENSMMUG00000012846

Aliases:None
Description:T-complex protein 1 subunit alpha [Source:RefSeq peptide;Acc:NP_001244657]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:4:156767404..156778395(-)


>ENSMMUG00000012846
ATGGAGGGGCCTTTGTCCGTGTTCGGTGACCGCAGCACTGGGGAAGCGATCCGCTCCCAGAACGTTATGGCTGCAGCTTC
GATTGCCAATATTGTAAAAAGTTCTCTTGGTCCTGTTGGCTTGGATAAAATGCTGGTGGATGATATCGGTGATGTGACCA
TTACTAACGATGGTGCAACCATCCTCAAGTTACTGGAAGTTGAACATCCTGCAGCTAAAGTTCTTTGTGAGCTGGCTGAT
CTGCAAGACAAAGAAGTTGGAGATGGAACTACATCAGTGGTTATTATTGCCGCAGAACTCCTAAAAAATGCAGATGAATT
AGTCAAACAGAAAATTCATCCCACATCAGTTATTAGTGGCTATCGACTTGCTTGCAAGGAAGCAGTGCGTTATATCAATG
AAAACCTAATTGTTAACACAGATGAACTGGGAAGAGATTGCCTGATTAATGCTGCTAAGACATCCATGTCTTCCAAAATC
ATTGGAATAAATGGTGATTTCTTTGCTAACATGGTAGTAGATGCTGTACTTGCTATTAAATACACAGACACAAGAGGCCA
GCCACGCTATCCAGTCAATTCTGTTAATATTTTGAAAGCCCATGGGAGAAGTCAAATGGAGAGTATGCTCATCAGTGGCT
ATGCACTCAACTGTGTGGTGGGATCCCAGGGCATGCCCAAGAGAATCGTAAATGCAAAAATTGCTTGCCTTGACTTTAGC
CTGCAAAAAACAAAAATGAAGCTTGGTGTACAGGTGGTCATTACAGACCCTGAAAAACTGGACCAAATTAGACAGAGAGA
ATCAGATATCACCAAGGAGAGAATTCAGAAGATCCTGGCGACTGGTGCCAATGTTATTCTAACCACTGGTGGAATTGATG
ATATGTGTCTGAAGTATTTTGTGGAGGCTGGTGCTATGGCAGTTAGAAGAGTTTTAAAAAGGGACCTTAAACGCATTGCG
AAAGCTTCTGGAGCAACTATTCTGTCAACCCTGGCCAATTTGGAAGGTGAAGAAACTTTTGAAGCTGCAATGTTGGGACA
GGCAGAAGAAGTGGTACAGGAGAGAATTTGTGATGATGAGCTGATCTTAATCAAAAACACTAAGGCTCGTACATCTGCAT
CGATTATCTTACGTGGGGCAAATGATTTCATGTGTGATGAGATGGAGCGCTCGTTACATGATGCACTTTGTGTAGTGAAG
AGAGTTTTGGAGTCAAAATCCGTGGTTCCCGGTGGAGGTGCTGTAGAAGCAGCCCTTTCCATATACCTTGAAAACTATGC
AACCAGCATGGGGTCTCGGGAACAGCTTGCTATTGCAGAGTTTGCAAGATCACTTCTTGTTATTCCCAATACACTAGCAG
TTAATGCTGCCCAGGACTCCACAGATCTGGTTGCAAAATTAAGAGCTTTTCATAATGAGGCTCAGGTTAACCCAGAACGT
AAAAATCTAAAATGGATTGGTCTTGATTTGAGCAATGGTAAACCTCGAGACAACAAACAAGCAGGGGTGTTTGAACCAAC
CATAGTTAAAGTTAAGAGTTTGAAATTTGCAACAGAAGCTGCAATTACCATTCTTCGAATTGATGATCTTATTAAATTAC
ATCCAGAAAGTAAAGATGATAAACATGGAAGTTATGAAGATGCTGTTCACTCTGGAGCCCTTAATGATTGA

Library Parental gene expression (RPM)
SRP007412_brain 84 .26 RPM
SRP007412_brain_prefrontal_cortex 77 .03 RPM
SRP007412_cerebellum 73 .81 RPM
SRP007412_heart 50 .52 RPM
SRP007412_kidney 54 .22 RPM
SRP007412_liver 29 .45 RPM
SRP007412_testis 177 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015405 ortholog_one2many 1 retrogene
retro_amel_828,
Callithrix jacchus ENSCJAG00000011792 ortholog_one2many 2 retrogenes
retro_cjac_1867, retro_cjac_2193,
Equus caballus ENSECAG00000017953 ortholog_one2many 1 retrogene
retro_ecab_798,
Homo sapiens ENSG00000120438 ortholog_one2many 1 retrogene
retro_hsap_3722,
Gorilla gorilla ENSGGOG00000014063 ortholog_one2many 1 retrogene
retro_ggor_2514,
Microcebus murinus ENSMICG00000007998 ortholog_one2many 1 retrogene
retro_mmur_795,
Oryctolagus cuniculus ENSOCUG00000013847 ortholog_one2many 1 retrogene
retro_ocun_1577,
Pongo abelii ENSPPYG00000017146 ortholog_one2many 1 retrogene
retro_pabe_3135,
Pan troglodytes ENSPTRG00000018760 ortholog_one2many 1 retrogene
retro_ptro_2617,
Pteropus vampyrus ENSPVAG00000005316 ortholog_one2many 1 retrogene
retro_pvam_522,
Rattus norvegicus ENSRNOG00000014160 possible_ortholog 1 retrogene
retro_rnor_2091,
Sorex araneus ENSSARG00000002463 ortholog_one2many 1 retrogene
retro_sara_624,
Sarcophilus harrisii ENSSHAG00000015128 ortholog_many2many 1 retrogene
retro_shar_830,
Ictidomys tridecemlineatus ENSSTOG00000005572 ortholog_one2many 1 retrogene
retro_itri_1274,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1696 88.33 85.79
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Download FASTA sequences of all ENSMMUG00000012846 retrocopies