Parental gene:

AP1S3, ENSCJAG00000012352

Aliases:None
Description:adaptor-related protein complex 1, sigma 3 subunit [Source:HGNC Symbol;Acc:18971]
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:140303237..140391039(-)


>ENSCJAG00000012352
ATGATACATTTCATATTGCTCTTCAGTCGACAAGGGAAATTACGGCTGCAGAAATGGTACGTCACTCTCCCTGACAAAGA
GAGGAAGAAGATCACGCGAGAAATTGTTCAGATTATTCTCTCCCGTGGTCACAGGACAAGCAGTTTTATTGACTGGAAGG
AGCTAAAACTTGTTTATAAAAGGTATGCTAGTTTATATTTTTGCTGTGCAGTAGACAATCAGGACAATGAACTCTTGACG
CTAGAGATTGTGCATCGTTACGTGGAGCTGCTGGACAAATATTTTGGAAATGTCTGCGAGCTGGATATTATCTTTAATTT
TGAAAAGGCTTATTTCATCCTGGACGAGTTTATAATAGGTGGAGAAATTCAGGAAACATCCAAGAAAATCGCTGTCAAAG
CCATTGAAGACTCTGATATGTTACAAGAGAATCACTTGAATCCAGGAGGTGGAGGTTGCAGTGAGCCGAGACTGCGCCAC
TGCACTCCAGCC

Library Parental gene expression (RPM)
SRP051959_colon 2 .00 RPM
SRP051959_heart 0 .16 RPM
SRP051959_kidney 4 .75 RPM
SRP051959_liver 1 .10 RPM
SRP051959_lung 0 .41 RPM
SRP051959_lymph_node 0 .14 RPM
SRP051959_skeletal_muscle 0 .04 RPM
SRP051959_spleen 0 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011939 ortholog_one2one 5 retrogenes
retro_chof_113, retro_chof_1230, retro_chof_1299, retro_chof_1949, retro_chof_2099,
Callithrix jacchus ENSCJAG00000004393 within_species_paralog 1 retrogene
retro_cjac_2312,
Callithrix jacchus ENSCJAG00000005786 within_species_paralog 1 retrogene
retro_cjac_2742,
Macropus eugenii ENSMEUG00000016580 ortholog_one2one 11 retrogenes
retro_meug_1074, retro_meug_1342, retro_meug_1488, retro_meug_168, retro_meug_1864, retro_meug_289, retro_meug_318, retro_meug_361, retro_meug_816, retro_meug_909, retro_meug_938,
Microcebus murinus ENSMICG00000014406 ortholog_one2one 1 retrogene
retro_mmur_1492,
Monodelphis domestica ENSMODG00000021198 ortholog_one2one 1 retrogene
retro_mdom_1427,
Mus musculus ENSMUSG00000054702 ortholog_one2one 3 retrogenes
retro_mmus_2202, retro_mmus_2799, retro_mmus_487,
Ochotona princeps ENSOPRG00000013358 ortholog_one2one 1 retrogene
retro_opri_443,
Pan troglodytes ENSPTRG00000012979 ortholog_one2one 1 retrogene
retro_ptro_2258,
Sarcophilus harrisii ENSSHAG00000010973 ortholog_one2one 1 retrogene
retro_shar_695,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3187 68.25 81.82
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2. retro_cjac_3903 71.19 76.62
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Download FASTA sequences of all ENSCJAG00000012352 retrocopies