Parental gene:

AP1S3, ENSPTRG00000012979

Aliases:None
Description:adaptor-related protein complex 1, sigma 3 subunit [Source:HGNC Symbol;Acc:18971]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2B:228861918..228944203(-)


>ENSPTRG00000012979
ATGATACATTTCATATTGCTCTTCAGTCGACAAGGGAAATTACGGCTACAGAAATGGTACATCACTCTCCCTGACAAAGA
GAGGAAGAAGATCACCCGGGAAATTGTTCAGATTATTCTCTCCCGTGGTCACAGGACAAGCAGTTTTGTTGACTGGAAGG
AGCTAAAACTTGTTTATAAAAGGTATGCTAGTTTATATTTTTGCTGTGCAATAGAAAATCAGGACAATGAGCTCTTGACG
CTAGAGATTGTGCATCGTTACGTGGAGCTGCTGGACAAATATTTTGGAAATGTCTGCGAGCTGGATATTATCTTTAATTT
TGAAAAGGCTTATTTCATCCTGGACGAGTTTATAATAGGTGGGGAAATTCAGGAAACATCCAAGAAAATTGCTGTCAAAG
CCATTGAAGACTCTGATATGTTACAGGAGACAATGGAAGAATACATGAACAAGCCTACATTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .38 RPM
SRP007412_cerebellum 0 .54 RPM
SRP007412_heart 0 .03 RPM
SRP007412_kidney 4 .18 RPM
SRP007412_liver 3 .18 RPM
SRP007412_testis 0 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011939 ortholog_one2one 5 retrogenes
retro_chof_113, retro_chof_1230, retro_chof_1299, retro_chof_1949, retro_chof_2099,
Callithrix jacchus ENSCJAG00000012352 ortholog_one2one 2 retrogenes
retro_cjac_3187, retro_cjac_3903,
Macropus eugenii ENSMEUG00000016580 ortholog_one2one 11 retrogenes
retro_meug_1074, retro_meug_1342, retro_meug_1488, retro_meug_168, retro_meug_1864, retro_meug_289, retro_meug_318, retro_meug_361, retro_meug_816, retro_meug_909, retro_meug_938,
Microcebus murinus ENSMICG00000014406 ortholog_one2one 1 retrogene
retro_mmur_1492,
Monodelphis domestica ENSMODG00000021198 ortholog_one2one 1 retrogene
retro_mdom_1427,
Mus musculus ENSMUSG00000054702 ortholog_one2one 3 retrogenes
retro_mmus_2202, retro_mmus_2799, retro_mmus_487,
Ochotona princeps ENSOPRG00000013358 ortholog_one2one 1 retrogene
retro_opri_443,
Pan troglodytes ENSPTRG00000006239 within_species_paralog 1 retrogene
retro_ptro_2368,
Pan troglodytes ENSPTRG00000019520 within_species_paralog 3 retrogenes
retro_ptro_1234, retro_ptro_24, retro_ptro_2554,
Sarcophilus harrisii ENSSHAG00000010973 ortholog_one2one 1 retrogene
retro_shar_695,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2258 75.00 75.32
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Download FASTA sequences of all ENSPTRG00000012979 retrocopies