Parental gene: | RNPS1, ENSCJAG00000014969 |
| Aliases: | None |
| Description: | RNA binding protein S1, serine-rich domain [Source:HGNC Symbol;Acc:10080] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:2334874..2347980(+) |
>ENSCJAG00000014969
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTAGGGCTCCTTC
TCCTACCAAACGCAAAGACCGCTCAGATGAGAAGTCCAAGGATCGTTCAAAAGATAAAGGGGCCACCAAGGAGTCGAGCG
AGAAGGATCGCGGCAGGGACAAAACCCGAAAGAGGCGCAGCGCTTCCAGTGGTAGCAGCAGCACCAGGCCTGAGTCAGCA
TCAGCCAGCAGCTGCCTTCCCAGCCTGAGAAAGGCTTCTCTATGGGTAGAAAGCAGCCTATCACCTCTGTCCTGTTCCCT
GCACAGTGTGACACCTAGGGCTCTGGTTTGCTGGGGGATGGGACAGAGCTCCTCTGGCTCTCCGAGTCCTTCTCGGCGCA
GGCACGACAATAGAAGGCGCTCCCGCTCCAAATCCAAACCACCTAAAAGAGATGAAAAGGAGAGGAAGAGGCGGAGCCCA
TCCCCTAAGCCCACCAAAGTGCACATTGGGAGACTCACCAGGAATGTGACCAAGGATCACATCATGGAGATATTTTCCAC
GTATGGGAAAATTAAAATGATTGACATGCCAGTGGAAAGGATGCATCCCCATCTGTCCAAAGGCTATGCATACGTTGAGT
TTGAGAATCCAGATGAAGCTGAAAAGGCGCTGAAGCACATGGACGGAGGACAAATTGATGGCCAGGAGATCACTGCCACC
GCTGTGCTGGCACCCTGGCCTAGACCACCCCCCAGGCGATTCAGCCCTCCCAGGAGAATGCTGCCGCCACCACCCATGTG
GCGCAGGTCTCCCCCACGGATGAGGAGAAGATCCCGCTCCCCAAGGCGCAGGTCCCCTGTGCGTCGGCGATCACGCTCCC
CAGGCCGCCGCCGCCACAGGAGCCGCTCCAGCTCCAACTCCTCCCGTTAA
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTAGGGCTCCTTC
TCCTACCAAACGCAAAGACCGCTCAGATGAGAAGTCCAAGGATCGTTCAAAAGATAAAGGGGCCACCAAGGAGTCGAGCG
AGAAGGATCGCGGCAGGGACAAAACCCGAAAGAGGCGCAGCGCTTCCAGTGGTAGCAGCAGCACCAGGCCTGAGTCAGCA
TCAGCCAGCAGCTGCCTTCCCAGCCTGAGAAAGGCTTCTCTATGGGTAGAAAGCAGCCTATCACCTCTGTCCTGTTCCCT
GCACAGTGTGACACCTAGGGCTCTGGTTTGCTGGGGGATGGGACAGAGCTCCTCTGGCTCTCCGAGTCCTTCTCGGCGCA
GGCACGACAATAGAAGGCGCTCCCGCTCCAAATCCAAACCACCTAAAAGAGATGAAAAGGAGAGGAAGAGGCGGAGCCCA
TCCCCTAAGCCCACCAAAGTGCACATTGGGAGACTCACCAGGAATGTGACCAAGGATCACATCATGGAGATATTTTCCAC
GTATGGGAAAATTAAAATGATTGACATGCCAGTGGAAAGGATGCATCCCCATCTGTCCAAAGGCTATGCATACGTTGAGT
TTGAGAATCCAGATGAAGCTGAAAAGGCGCTGAAGCACATGGACGGAGGACAAATTGATGGCCAGGAGATCACTGCCACC
GCTGTGCTGGCACCCTGGCCTAGACCACCCCCCAGGCGATTCAGCCCTCCCAGGAGAATGCTGCCGCCACCACCCATGTG
GCGCAGGTCTCCCCCACGGATGAGGAGAAGATCCCGCTCCCCAAGGCGCAGGTCCCCTGTGCGTCGGCGATCACGCTCCC
CAGGCCGCCGCCGCCACAGGAGCCGCTCCAGCTCCAACTCCTCCCGTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 19 .20 RPM |
| SRP051959_skeletal_muscle | 23 .21 RPM |
| SRP051959_lymph_node | 31 .51 RPM |
| SRP051959_lung | 24 .19 RPM |
| SRP051959_liver | 9 .51 RPM |
| SRP051959_kidney | 15 .31 RPM |
| SRP051959_heart | 18 .45 RPM |
| SRP051959_colon | 11 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000023288 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000014275 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000008882 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000016808 | possible_ortholog | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000015891 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000034681 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004387 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031582 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008703 | possible_ortholog | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000016951 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000013200 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2127 | 70.91 | 53.77 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3377 | 71.52 | 53.77 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000014969 retrocopies