Parental gene:

RNPS1, ENSOCUG00000004387

Aliases:None
Description:RNA binding protein S1, serine-rich domain [Source:HGNC Symbol;Acc:10080]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018968:21683..27477(-)


>ENSOCUG00000004387
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTAGGGCTCCCTC
TCCTACCAAGCGCAAAGACCGCTCTGACGAGAAGTCCAAGGACCGCTCCAAAGATAAAGGGGCCACCAAGGAGTCCAGTG
AGAAGGACCGCGGCCGGGACAAGGCGCGGAAGCGGCGCAGCGCTTCCAGCGGCAGCAGCAGCACCAGGTGGGGCGGGCGG
GCCGGCGGCAGCCACAGCCGCCTCTCCACACGCACCTGCACGCTGGTGCCAGAGACCCCGGTGCCAGGCCGCTCAGGGTC
TGCTCTGGGTGTACGGAGGGACGGCCTTTCTAGCTCCTCTGGCTCCCCGAGCCCCTCCCGGCGCAGGCACGACAACAGAC
GGCGCTCGCGCTCCAAATCCAAACCCCCTAAAAGAGATGAAAAGGAGAGGAAAAGACGGAGCCCGTCCCCTAAACCCACC
AAAGTGCACATTGGGAGGCTCACCAGGAACGTGACCAAGGACCACATCATGGAGATATTTTCCACCTATGGGAAGATTAA
AATGATTGACATGCCTGTGGACAGGATGCACCCCCACCTGTCCAAAGGCTACGCCTATGTGGAGTTTGAGAACCCGGACG
AGGCCGAGAAGGCACTGAAGCACATGGACGGAGGACAGATCGATGGCCAGGAGATCACCGCTACTGCTGTGCTGGCCCCC
TGGCCCCGGCCGCCCCCTCGGCGGTTCAGTCCTCCCAGGAGAATGCTCCCACCGCCTCCTATGTGGCGCCGGTCACCCCC
GCGGATGCGGAGAAGGTCTCGCTCCCCGAGGCGCAGGTCTCCCGTGCGCCGGAGATCCCGCTCTCCCGGCCGCCGCCGCC
ACAGGAGCCGCTCCAGCTCCAACTCCTCCCGATAA

Library Parental gene expression (RPM)
SRP017611_brain 96 .91 RPM
SRP017611_kidney 79 .87 RPM
SRP017611_liver 27 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000014969 ortholog_one2one 2 retrogenes
retro_cjac_2127, retro_cjac_3377,
Equus caballus ENSECAG00000023288 ortholog_one2one 1 retrogene
retro_ecab_524,
Gorilla gorilla ENSGGOG00000014275 ortholog_one2one 1 retrogene
retro_ggor_2016,
Macropus eugenii ENSMEUG00000008882 ortholog_one2one 1 retrogene
retro_meug_1996,
Myotis lucifugus ENSMLUG00000016808 possible_ortholog 3 retrogenes
retro_mluc_2237, retro_mluc_2618, retro_mluc_643,
Monodelphis domestica ENSMODG00000015891 ortholog_one2one 1 retrogene
retro_mdom_1171,
Mus musculus ENSMUSG00000034681 possible_ortholog 1 retrogene
retro_mmus_173,
Otolemur garnettii ENSOGAG00000031582 ortholog_one2one 1 retrogene
retro_ogar_3241,
Rattus norvegicus ENSRNOG00000008703 possible_ortholog 4 retrogenes
retro_rnor_1537, retro_rnor_2135, retro_rnor_2988, retro_rnor_649,
Sarcophilus harrisii ENSSHAG00000016951 ortholog_one2one 1 retrogene
retro_shar_390,
Ictidomys tridecemlineatus ENSSTOG00000013200 ortholog_one2one 1 retrogene
retro_itri_1160,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1544 81.05 61.51
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2. retro_ocun_1745 85.48 60.86
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Download FASTA sequences of all ENSOCUG00000004387 retrocopies