Parental gene:

Rnps1, ENSRNOG00000008703

Aliases:None
Description:RNA-binding protein with serine-rich domain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AYK1]
Organism:Rat (Rattus norvegicus)
Coordinates:10:13603388..13613703(+)


>ENSRNOG00000008703
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAGAATAATAAAAAGTCCAGCACTAGGGCTCCTTC
TCCTACCAAACGAAAGGACCGCTCTGATGAGAAGTCCAAGGATCGATCTAAAGATAAAGGGACCACTAAAGAGTCCAGTG
AGAAGGATCGTGGCAGAGATAAGACCCGGAAGAGACGCAGTGCTTCAAGCGGAAGCAGCAGCACCAGGTCCAGGTCCAGC
TCAACCTCCAGCTCGGGCTCCAGCACCAGCACGGGCTCGAGCAGTGGCTCTAGCTCGTCTTCTGCGTCCAGCCGCTCAGG
AAGCTCCAGCACATCCCGGAGCTCCAGTTCCAGCAGCTCCTCCGGCTCCCCAAGCCCTTCTCGGCGCAGACATGACAACA
GGCGGCGTTCCCGCTCCAAATCCAAACCACCTAAAAGAGATGAAAAAGAGAGGAAAAGGCGGAGCCCTTCACCTAAACCC
ACCAAAGTGCACATTGGGAGGCTCACCAGGAATGTGACCAAGGATCATATCATGGAAATATTTTCTACTTACGGGAAAAT
TAAAATGATTGACATGCCTGTGGAAAGGATGCATCCTCATCTATCCAAAGGCTATGCGTACGTGGAATTCGAGAATCCGG
ATGAAGCAGAGAAGGCACTGAAACACATGGATGGAGGACAAATAGATGGCCAAGAGATCACTGCTACTGCGGTGTTGGCA
CCCTGGCCTCGTCCACCGCCTCGGCGATTCAGCCCACCCAGGAGAATGCTTCCACCGCCTCCCATGTGGCGTAGGTCACC
CCCACGGATGAGGAGAAGGTCTCGATCCCCAAGACGCAGGTCCCCTGTGCGAAGGAGGTCTCGATCGCCTGGCCGCCGCC
GCCACAGGAGCCGATCCAGCTCCAACTCCTCCCGATAA

Library Parental gene expression (RPM)
SRP017611_brain 75 .71 RPM
SRP017611_kidney 42 .29 RPM
SRP017611_liver 21 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017861 possible_ortholog 1 retrogene
retro_amel_194,
Bos taurus ENSBTAG00000009969 possible_ortholog 7 retrogenes
retro_btau_1187, retro_btau_1239, retro_btau_1283, retro_btau_1515, retro_btau_764, retro_btau_776, retro_btau_85,
Canis familiaris ENSCAFG00000019397 possible_ortholog 1 retrogene
retro_cfam_449,
Choloepus hoffmanni ENSCHOG00000004866 ortholog_one2one 4 retrogenes
retro_chof_1587, retro_chof_1985, retro_chof_2272, retro_chof_493,
Callithrix jacchus ENSCJAG00000014969 possible_ortholog 2 retrogenes
retro_cjac_2127, retro_cjac_3377,
Cavia porcellus ENSCPOG00000002066 ortholog_one2one 2 retrogenes
retro_cpor_363, retro_cpor_953,
Equus caballus ENSECAG00000023288 ortholog_one2many 1 retrogene
retro_ecab_524,
Felis catus ENSFCAG00000007690 possible_ortholog 1 retrogene
retro_fcat_248,
Homo sapiens ENSG00000205937 possible_ortholog 1 retrogene
retro_hsap_2911,
Gorilla gorilla ENSGGOG00000014275 possible_ortholog 1 retrogene
retro_ggor_2016,
Macropus eugenii ENSMEUG00000008882 ortholog_one2many 1 retrogene
retro_meug_1996,
Myotis lucifugus ENSMLUG00000016808 possible_ortholog 3 retrogenes
retro_mluc_2237, retro_mluc_2618, retro_mluc_643,
Macaca mulatta ENSMMUG00000019238 possible_ortholog 1 retrogene
retro_mmul_794,
Monodelphis domestica ENSMODG00000015891 ortholog_one2many 1 retrogene
retro_mdom_1171,
Mus musculus ENSMUSG00000034681 possible_ortholog 1 retrogene
retro_mmus_173,
Oryctolagus cuniculus ENSOCUG00000004387 possible_ortholog 2 retrogenes
retro_ocun_1544, retro_ocun_1745,
Otolemur garnettii ENSOGAG00000031582 ortholog_one2many 1 retrogene
retro_ogar_3241,
Pan troglodytes ENSPTRG00000031310 ortholog_one2one 1 retrogene
retro_ptro_1967,
Pteropus vampyrus ENSPVAG00000005105 ortholog_one2one 1 retrogene
retro_pvam_296,
Sarcophilus harrisii ENSSHAG00000016951 ortholog_one2many 1 retrogene
retro_shar_390,
Ictidomys tridecemlineatus ENSSTOG00000013200 ortholog_one2many 1 retrogene
retro_itri_1160,
Tupaia belangeri ENSTBEG00000009098 possible_ortholog 8 retrogenes
retro_tbel_1262, retro_tbel_1851, retro_tbel_2132, retro_tbel_2154, retro_tbel_2216, retro_tbel_3193, retro_tbel_3286, retro_tbel_4688,
Tarsius syrichta ENSTSYG00000001629 possible_ortholog 1 retrogene
retro_tsyr_957,
Tursiops truncatus ENSTTRG00000008220 possible_ortholog 7 retrogenes
retro_ttru_1010, retro_ttru_1033, retro_ttru_1558, retro_ttru_1808, retro_ttru_1809, retro_ttru_203, retro_ttru_986,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_649 79.84 82.30
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2. retro_rnor_1537 90.06 52.79
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3. retro_rnor_2135 85.41 92.13
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4. retro_rnor_2988 83.15 90.82
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Download FASTA sequences of all ENSRNOG00000008703 retrocopies