RetrogeneDB ID: | retro_meug_1996 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold77647:6538..7150(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNPS1 | ||
Ensembl ID: | ENSMEUG00000008882 | ||
Aliases: | None | ||
Description: | RNA binding protein S1, serine-rich domain [Source:HGNC Symbol;Acc:10080] |
Percent Identity: | 59.22 % |
Parental protein coverage: | 66.23 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | ENNKKSSTRAPSPTKRKDRTDDKSKDRSKDKGATKESSEKDRGRDKARKRRSASSGSSTSRSRS-SSTSS |
E.....ST...S.T....R....S...S.........S............R...S.SS.S.S.S.S.... | |
Retrocopy | EKDRGRSTFSGSSTSSRIRSSSISSSGSSTNTDSRSGSSSSSAFS*SGSSRTSQSSSSSSSSGS<SKSLL |
Parental | SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR |
....T.T.S.SGSSSSSA.S.SGSS.TS.SSSSSSSSGSPSPS..RHD.RR.S.SKSK.PK..EKERKR. | |
Retrocopy | XXXXTNTDSRSGSSSSSAFS*SGSSRTSQSSSSSSSSGSPSPS*GRHDDRRCSHSKSKRPKSEEKERKRQ |
Parental | SPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKG--YAYV-EFENPDEAE |
S.SPKPTK.HIGR.TRNVTKD.IMEIF.TYGKIKMIDMPVERMHPHLSKG....YV.EFENPDEA. | |
Retrocopy | SLSPKPTKIHIGRFTRNVTKDYIMEIFPTYGKIKMIDMPVERMHPHLSKGSYISYV>EFENPDEAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |