Parental gene: | NME1, ENSCJAG00000018395 |
| Aliases: | None |
| Description: | nucleoside diphosphate kinase A [Source:RefSeq peptide;Acc:NP_001191805] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:106404565..106553613(-) |
>ENSCJAG00000018395
GTGGTGCTGCTGTCTACTTTAGGAATTGTCTTTCAAGTCGAGGGGCCTCCTGTCTCAAGCTGTGATACAGGGACCATGGC
CAACTGTGAGCGTACCTTCATTGCGATCAAACCAGATGGGGTCCAGCGGGGTCTTGTGGGAGAGATTATCAAGCGTTTTG
AGCAGAAGGGGTTCCGCCTTGTTGGTCTGAAATTCATGCAGGCCTCTGAAGACCTTCTCAAGGAACACTACATCGACCTG
AAGGACCGTCCATTCTTTGCTGGCCTGGTGAAATACATGCACTCAGGGCCGGTAGTTGCCATGGTCTGGGAGGGGCTGAA
TGTGGTGAAGACAGGCCGAGTCATGCTCGGGGAGACCAACCCTGCGGACTCCAAGCCTGGGACCATCCGTGGAGACTTCT
GCATACAAGTTGGCAGGACCATGGCCAACCTCGAGCGTACCTTCATCGCCATCAAGCCAGACGGCGTGCAGCGCGGCCTG
GTGGGCGAGATCATCAAGCGCTTCGAGCAGAAGGGGTTCCGCCTCGTGGCCATGAAGTTCCTCCGGGCCTCTGAGGAACA
CCTGAAGCAGCATTACATTGACCTGAAAGACCGCCCATTCTTCCCTGGGCTGGTGAAGTACATGAACTCAGGGCCAGTTG
TGGCCATGGTCTGGGAGGGGCTGAATGTGGTGAAGACAGGTCGAGTGATGCTTGGGGAGACCAATCCAGCAGATTCTAAG
CCAGGCACCATTCGTGGGGACTTCTGCATTCAGGTTGGCAGGAACATCATTCATGGCAGTGACTCAGTAAAAAGTGCTGA
CAAAGAAATCAGCCTGTGGTTTAAGCCTGAAGAACTGGTTGACTACAAGTCTTGTGCTCATGACTGGGTCTATGAATAA
GTGGTGCTGCTGTCTACTTTAGGAATTGTCTTTCAAGTCGAGGGGCCTCCTGTCTCAAGCTGTGATACAGGGACCATGGC
CAACTGTGAGCGTACCTTCATTGCGATCAAACCAGATGGGGTCCAGCGGGGTCTTGTGGGAGAGATTATCAAGCGTTTTG
AGCAGAAGGGGTTCCGCCTTGTTGGTCTGAAATTCATGCAGGCCTCTGAAGACCTTCTCAAGGAACACTACATCGACCTG
AAGGACCGTCCATTCTTTGCTGGCCTGGTGAAATACATGCACTCAGGGCCGGTAGTTGCCATGGTCTGGGAGGGGCTGAA
TGTGGTGAAGACAGGCCGAGTCATGCTCGGGGAGACCAACCCTGCGGACTCCAAGCCTGGGACCATCCGTGGAGACTTCT
GCATACAAGTTGGCAGGACCATGGCCAACCTCGAGCGTACCTTCATCGCCATCAAGCCAGACGGCGTGCAGCGCGGCCTG
GTGGGCGAGATCATCAAGCGCTTCGAGCAGAAGGGGTTCCGCCTCGTGGCCATGAAGTTCCTCCGGGCCTCTGAGGAACA
CCTGAAGCAGCATTACATTGACCTGAAAGACCGCCCATTCTTCCCTGGGCTGGTGAAGTACATGAACTCAGGGCCAGTTG
TGGCCATGGTCTGGGAGGGGCTGAATGTGGTGAAGACAGGTCGAGTGATGCTTGGGGAGACCAATCCAGCAGATTCTAAG
CCAGGCACCATTCGTGGGGACTTCTGCATTCAGGTTGGCAGGAACATCATTCATGGCAGTGACTCAGTAAAAAGTGCTGA
CAAAGAAATCAGCCTGTGGTTTAAGCCTGAAGAACTGGTTGACTACAAGTCTTGTGCTCATGACTGGGTCTATGAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 42 .14 RPM |
| SRP051959_skeletal_muscle | 75 .19 RPM |
| SRP051959_lymph_node | 38 .49 RPM |
| SRP051959_lung | 25 .60 RPM |
| SRP051959_liver | 50 .62 RPM |
| SRP051959_kidney | 68 .24 RPM |
| SRP051959_heart | 39 .69 RPM |
| SRP051959_colon | 46 .68 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008022 | possible_ortholog | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000003783 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000011052 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000016929 | possible_ortholog | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000001940 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000002671 | possible_ortholog | 8 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000014470 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000017591 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000013053 | ortholog_one2many | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_471 | 66.23 | 57.30 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1765 | 77.85 | 57.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2517 | 92.62 | 80.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2642 | 81.01 | 59.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3940 | 86.93 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000018395 retrocopies