RetrogeneDB ID: | retro_cjac_1765 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:18671236..18671698(+) | ||
Located in intron of: | ENSCJAG00000018960 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NME1 | ||
Ensembl ID: | ENSCJAG00000018395 | ||
Aliases: | None | ||
Description: | nucleoside diphosphate kinase A [Source:RefSeq peptide;Acc:NP_001191805] |
Percent Identity: | 77.85 % |
Parental protein coverage: | 57.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | RTMANLERTFIAIK-PDGVQRGLVGEIIKRFEQKGF-RLVAMKFLRASEEHLKQHYIDLKDRPFFPG-LV |
RT.ANLERTFIAIK..DGVQR.LVG.IIK.F.Q.GF..LVAMKFL.ASEE.LKQHYIDLKD.PFFP..LV | |
Retrocopy | RTRANLERTFIAIK<ADGVQRSLVGNIIKHFQQQGF<HLVAMKFLLASEEQLKQHYIDLKDHPFFPQ>LV |
Parental | KYMNSGPVVAMVWEGLNVVKTGRVMLG-ETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSADKEISLWF |
KY.NSG..V.MVWE.LNVVKT..VMLG.ETNP..SKP.TI.GDFCIQVGRNII..SDSVKSA.KEISLWF | |
Retrocopy | KYLNSGLAVTMVWEALNVVKTR*VMLG>ETNPVASKPRTICGDFCIQVGRNIIYDSDSVKSAKKEISLWF |
Parental | KPEELVDYKSCAHDWVYE |
KPEE..DYKSCAH..V.E | |
Retrocopy | KPEEIFDYKSCAHHRVHE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 46 .68 RPM |
SRP051959_heart | 0 .00 RPM | 39 .69 RPM |
SRP051959_kidney | 0 .04 RPM | 68 .24 RPM |
SRP051959_liver | 0 .00 RPM | 50 .62 RPM |
SRP051959_lung | 0 .05 RPM | 25 .60 RPM |
SRP051959_lymph_node | 0 .00 RPM | 38 .49 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 75 .19 RPM |
SRP051959_spleen | 0 .00 RPM | 42 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008022 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000018395 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000003783 | 2 retrocopies | |
Homo sapiens | ENSG00000011052 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016929 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000001940 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002671 | 8 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000014470 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000017591 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013053 | 6 retrocopies |