Parental gene:

FKBP4, ENSCJAG00000018746

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:14397425..14409285(+)


>ENSCJAG00000018746
ATGACAGCCGAGGAGATGAAGGCGACCGAGAACGGGGCGCAGTCCGCGCCGCTGCCGGTGGAGGGAGTGGACATAAGCCC
CAAACAGGACGAAGGCGTGCTGAAGGTCATCAAGAGAGAGGGCACAGGTACAGAGATGCCCATGATTGGGGACCGAGTCT
TTGTCCACTACACTGGCTGGCTGTTAGATGGCACAAAGTTTGACTCCAGTCTGGATCGCAAGGACAAATTCTCCTTTGAC
CTGGGAAAAGGGGAGGTCATCAAGGCTTGGGACATTGCCATAGCAACCATGAAAGTTGGGGAGGTGTGCCACATCACCTG
CAAACCAGAATATGCCTACGGTTCAGCAGGCAGTCCTCCAAAGATCCCCCCCAATGCCACGCTTGTGTTTGAGGTGGAGT
TGTTTGAGTTTAAGGGAGAAGATCTGACGGAAGAGGAAGATGGCGGAATCATCCGCAGAATACGGACTCGTGGTGAAGGC
TATGCTAAGCCCAATGAGGGCGCTATTGTGGAGGTTGCACTGGAAGGGTACTACAAAGACCAGCTCTTTGATCAACGAGA
GCTCCGCTTTGAGATTGGTGAGGGGGAGAACCTGGATCTGCCTTATGGTCTGGAGAGGGCCATTCAGCGCATGGAGAAAG
GAGAACATTCCATTGTATACCTCAAGCCCAGCTATGCTTTTGGCAAAGTTGGAAAGGAAAAGCTCCAAATCCCACCGAAT
GCTGAGCTGAAATATGAATTACACCTCAAGAGTTTTGAAAAGGCCAAGGAGTCTTGGGAAATGAATTCAGAAGAGAAGCT
AGAACAAAGCACCATAGTGAAAGAGCGGGGCACTGTGTACTTCAAGGAAGGCAAATACAAGCAAGCTTTACTACAGTATA
AGAAGATTGTGTCCTGGCTGGAATATGAATCTAGTTTTTCCAGTGAGGAAGCACAGAAGGCACAGGCCCTTCGACTGGCC
TCTCACCTCAATCTGGCCATGTGTCATCTGAAACTACAGGCCTTCTCTGCTGCCATTGGAAGCTGTAACAAGGCCCTAGA
ACTGGACAGCAACAACGAGAAGGGCCTTTTCCGCCGGGGAGAGGCCCACCTGGCCGTGAATGACTTTGACCTGGCACGGG
CTGACTTCCAGAAGGTCCTGCAGCTCTACCCCAACAACAAAGCCGCCAAGGCCCAGTTGGCTATGTGCCAACAGCGGATC
CGCAGGCAGCTTGCCCGGGAAAAGAAGCTCTATGCCAACATGTTTGAAAGGCTGGCTGAGGAGGAGAGTAAGGCCAAGGC
AGAGGCTTCCTCAGGAGACCGTCCCACTGACACAGACATGAAGGAGGAGCAGAAGAGCAACATGGCAGGGAGCCAGTCTC
AGGTGGAGACAGAAGCATAG

Library Parental gene expression (RPM)
SRP051959_spleen 20 .53 RPM
SRP051959_skeletal_muscle 15 .77 RPM
SRP051959_lymph_node 30 .87 RPM
SRP051959_lung 23 .95 RPM
SRP051959_liver 24 .67 RPM
SRP051959_kidney 16 .44 RPM
SRP051959_heart 10 .07 RPM
SRP051959_colon 12 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007605 ortholog_one2one 1 retrogene
retro_btau_561,
Callithrix jacchus ENSCJAG00000007700 within_species_paralog 1 retrogene
retro_cjac_696,
Callithrix jacchus ENSCJAG00000020908 within_species_paralog 4 retrogenes
retro_cjac_1544, retro_cjac_3889, retro_cjac_4157, retro_cjac_537,
Dasypus novemcinctus ENSDNOG00000011244 ortholog_one2one 1 retrogene
retro_dnov_894,
Homo sapiens ENSG00000004478 ortholog_one2one 5 retrogenes
retro_hsap_3085, retro_hsap_4162, retro_hsap_4165, retro_hsap_4264, retro_hsap_4266,
Gorilla gorilla ENSGGOG00000010471 ortholog_one2one 4 retrogenes
retro_ggor_2120, retro_ggor_2852, retro_ggor_2854, retro_ggor_2855,
Macaca mulatta ENSMMUG00000007405 ortholog_one2one 1 retrogene
retro_mmul_1969,
Nomascus leucogenys ENSNLEG00000002835 ortholog_one2one 1 retrogene
retro_nleu_2291,
Pongo abelii ENSPPYG00000004149 ortholog_one2one 4 retrogenes
retro_pabe_2607, retro_pabe_2611, retro_pabe_3383, retro_pabe_3518,
Pan troglodytes ENSPTRG00000004529 ortholog_one2one 3 retrogenes
retro_ptro_2083, retro_ptro_3000, retro_ptro_3001,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_436 76.64 65.80
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Download FASTA sequences of all ENSCJAG00000018746 retrocopies