Parental gene: | FKBP1A, ENSCJAG00000020908 |
| Aliases: | None |
| Description: | Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:F6SFB9] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:7311543..7332637(-) |
>ENSCJAG00000020908
GTGCGCAGGCGACTCGCCGAGGGACTAGGCAGAGCCGTGGAATCACCGCCAGTTCGCTGTCGGTCCACGCCGCCCGTCGC
GCTGCCCGCCCGTCCAGCGTCTGCCGCCGCCATGGGAGTGCAGGTGGAAACCATCTCCCCAGGAGACGGGCGCACCTTCC
CCAAGCGCGGCCAGACCTGCGTGGTGCACTACACCGGGATGCTTGAAGATGGAAAGAAATTTGATTCCTCCCGGGACAGA
AACAAGCCCTTTAAGTTTATGCTAGGCAAGCAGGAGGTGATCCGAGGCTGGGAAGAAGGGGTTGCCCAGATGAGTGTCGG
TCAGAGAGCCAAACTGACTATATCTCCAGATTATGCCTACGGTGCCACTGGGCACCCAGGCATCATCCCACCACATGCCA
CTCTTGTCTTTGATGTGGAGCTTCTAAAACTGGAATGA
GTGCGCAGGCGACTCGCCGAGGGACTAGGCAGAGCCGTGGAATCACCGCCAGTTCGCTGTCGGTCCACGCCGCCCGTCGC
GCTGCCCGCCCGTCCAGCGTCTGCCGCCGCCATGGGAGTGCAGGTGGAAACCATCTCCCCAGGAGACGGGCGCACCTTCC
CCAAGCGCGGCCAGACCTGCGTGGTGCACTACACCGGGATGCTTGAAGATGGAAAGAAATTTGATTCCTCCCGGGACAGA
AACAAGCCCTTTAAGTTTATGCTAGGCAAGCAGGAGGTGATCCGAGGCTGGGAAGAAGGGGTTGCCCAGATGAGTGTCGG
TCAGAGAGCCAAACTGACTATATCTCCAGATTATGCCTACGGTGCCACTGGGCACCCAGGCATCATCCCACCACATGCCA
CTCTTGTCTTTGATGTGGAGCTTCTAAAACTGGAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 8 .30 RPM |
| SRP051959_skeletal_muscle | 8 .98 RPM |
| SRP051959_lymph_node | 6 .87 RPM |
| SRP051959_lung | 11 .13 RPM |
| SRP051959_liver | 7 .45 RPM |
| SRP051959_kidney | 8 .19 RPM |
| SRP051959_heart | 9 .31 RPM |
| SRP051959_colon | 10 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000008303 | ortholog_one2many | 4 retrogenes | |
| Callithrix jacchus | ENSCJAG00000007700 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000018746 | within_species_paralog | 1 retrogene | |
| Ciona savignyi | ENSCSAVG00000006859 | ortholog_many2many | 1 retrogene | |
| Homo sapiens | ENSG00000088832 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000001729 | ortholog_one2many | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000015996 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000019554 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009356 | ortholog_one2one | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000002629 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000010852 | ortholog_one2one | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000013163 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000007188 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000003547 | ortholog_one2one | 3 retrogenes | |
| Vicugna pacos | ENSVPAG00000011511 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_537 | 76.27 | 81.38 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1544 | 76.80 | 84.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3889 | 85.98 | 73.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_4157 | 88.00 | 86.21 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000020908 retrocopies