Parental gene: | USP12P1, ENSCJAG00000019344 |
| Aliases: | USP12P1, USP12 |
| Description: | Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:F7FL24] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:140011817..140122082(-) |
>ENSCJAG00000019344
GTTTTTTTTTTACAGGATGTCTCTAACACCTGTGTAATTGTGACAATAGGCGCCAATGCTTCGGCATTAGAGAAAGAGAT
TGGTCCAGAACAGTTTCCGGTCAATGAGCATTATTTTGGATTAGTCAATTTTGGGAATACTTGCTACTGCAATTCAGTTC
TTCAAGCACTTTATTTTTGTCGTCCATTTCGGGAAAAAGTTCTTGCGTATAAGAGTCAACCTAGGAAAAAGGAGAGCCTT
CTTACATGCTTAGCAGATCTCTTCCACAGCATAGCCACTCAGAAGAAAAAGGTTGGAGTAATACCTCCTAAGAAGTTCAT
CACAAGATTACGGAAAGAAAATGAGCTTTTTGACAACTACATGCAACAAGATGCTCATGAATTCTTAAATTACCTACTAA
ACACGATTGCTGATATTTTACAAGAAGAGAGAAAGCAGGAAAAACAAAATGGTCGCTTACCTAATGGTAATATTGATAAT
GAAAATAATAACAGCACACCAGACCCAACGTGGGTTCATGAGATTTTTCAGGGAACATTAACTAATGAAACCAGATGTCT
TACTTGTGAAACTATAAGCAGCAAAGATGAAGATTTTTTAGACCTTTCTGTTGACGTGGAACAAAATACATCAATTACTC
ACTGCTTAAGGGGTTTCAGCAACACGGAAACTCTATGCAGTGAATACAAGTATTACTGTGAAGAGTGTCGCAGCAAACAG
GAAGCACACAAACGGATGAAAGTTAAAAAACTGCCCATGATTCTAGCTCTGCACCTGAAGAGATTTAAATATATGGATCA
ACTTCATCGATATACAAAACTCTCTTACCGGGTAGTTTTTCCTTTAGAACTTCGTCTATTTAACACTTCAGGTGATGCCA
CCAATCCAGACAGAATGTACGACCTTGTTGCTGTTGTGGTTCACTGTGGAAGTGGTCCCAATCGAGGCCATTACATTGCA
ATAGTTAAGAGTCATGATTTTTGGTTGTTGTTTGATGACGACATTGTAGAAAAAATAGATGCACAAGCTATTGAAGAATT
CTACGGGTTGACATCAGATATCTCAAAGAACTCTGAGTCTGGTTACATCCTTTTCTATCAGTCTCGGGACTGA
GTTTTTTTTTTACAGGATGTCTCTAACACCTGTGTAATTGTGACAATAGGCGCCAATGCTTCGGCATTAGAGAAAGAGAT
TGGTCCAGAACAGTTTCCGGTCAATGAGCATTATTTTGGATTAGTCAATTTTGGGAATACTTGCTACTGCAATTCAGTTC
TTCAAGCACTTTATTTTTGTCGTCCATTTCGGGAAAAAGTTCTTGCGTATAAGAGTCAACCTAGGAAAAAGGAGAGCCTT
CTTACATGCTTAGCAGATCTCTTCCACAGCATAGCCACTCAGAAGAAAAAGGTTGGAGTAATACCTCCTAAGAAGTTCAT
CACAAGATTACGGAAAGAAAATGAGCTTTTTGACAACTACATGCAACAAGATGCTCATGAATTCTTAAATTACCTACTAA
ACACGATTGCTGATATTTTACAAGAAGAGAGAAAGCAGGAAAAACAAAATGGTCGCTTACCTAATGGTAATATTGATAAT
GAAAATAATAACAGCACACCAGACCCAACGTGGGTTCATGAGATTTTTCAGGGAACATTAACTAATGAAACCAGATGTCT
TACTTGTGAAACTATAAGCAGCAAAGATGAAGATTTTTTAGACCTTTCTGTTGACGTGGAACAAAATACATCAATTACTC
ACTGCTTAAGGGGTTTCAGCAACACGGAAACTCTATGCAGTGAATACAAGTATTACTGTGAAGAGTGTCGCAGCAAACAG
GAAGCACACAAACGGATGAAAGTTAAAAAACTGCCCATGATTCTAGCTCTGCACCTGAAGAGATTTAAATATATGGATCA
ACTTCATCGATATACAAAACTCTCTTACCGGGTAGTTTTTCCTTTAGAACTTCGTCTATTTAACACTTCAGGTGATGCCA
CCAATCCAGACAGAATGTACGACCTTGTTGCTGTTGTGGTTCACTGTGGAAGTGGTCCCAATCGAGGCCATTACATTGCA
ATAGTTAAGAGTCATGATTTTTGGTTGTTGTTTGATGACGACATTGTAGAAAAAATAGATGCACAAGCTATTGAAGAATT
CTACGGGTTGACATCAGATATCTCAAAGAACTCTGAGTCTGGTTACATCCTTTTCTATCAGTCTCGGGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 35 .32 RPM |
| SRP051959_skeletal_muscle | 30 .44 RPM |
| SRP051959_lymph_node | 30 .82 RPM |
| SRP051959_lung | 46 .79 RPM |
| SRP051959_liver | 39 .70 RPM |
| SRP051959_kidney | 54 .11 RPM |
| SRP051959_heart | 52 .78 RPM |
| SRP051959_colon | 58 .04 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000152484 | ortholog_one2one | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000006269 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000021425 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000323 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000030639 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005232 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000005727 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000012960 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2734 | 67.23 | 77.84 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3901 | 81.36 | 63.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3964 | 85.46 | 61.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3965 | 85.02 | 61.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_4011 | 87.67 | 61.08 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000019344 retrocopies