RetrogeneDB ID: | retro_cjac_3965 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | GL286436.1:357706..358383(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000031623 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | USP12P1 | ||
Ensembl ID: | ENSCJAG00000019344 | ||
Aliases: | USP12P1, USP12 | ||
Description: | Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:F7FL24] |
Percent Identity: | 85.02 % |
Parental protein coverage: | 61.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAY |
.E.LM.VSKF.SICT....ASALEK.I.PEQFPVNEHYFG.VNFGNTCYCNS.LQALYFC.PFREKVL.Y | |
Retrocopy | LEMLMPVSKFSSICTTRTQASALEKQISPEQFPVNEHYFG*VNFGNTCYCNSLLQALYFCHPFREKVLPY |
Parental | KSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQD-AHEFLNYLLNTIADI |
K.QPRKKESLLTCLADLFHS.A.QKKKVGVIP.KKFITRLR.ENELFDN.MQQD..HEFLNYLLNTIADI | |
Retrocopy | KGQPRKKESLLTCLADLFHSTAAQKKKVGVIPSKKFITRLREENELFDNDMQQD<SHEFLNYLLNTIADI |
Parental | LQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQN |
LQEERKQEKQNG.LPNGNID.E.NNS.PDPTWV.EIFQGTLTNET.CLT.ET..SKDEDFLDLSVDVEQN | |
Retrocopy | LQEERKQEKQNGHLPNGNIDDESNNSAPDPTWVNEIFQGTLTNETTCLTYETTGSKDEDFLDLSVDVEQN |
Parental | TSITHCLRGFSNTETLC |
.SITHCL.GFSN.ETLC | |
Retrocopy | ASITHCLKGFSNRETLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 58 .04 RPM |
SRP051959_heart | 0 .00 RPM | 52 .78 RPM |
SRP051959_kidney | 0 .00 RPM | 54 .11 RPM |
SRP051959_liver | 0 .00 RPM | 39 .70 RPM |
SRP051959_lung | 0 .00 RPM | 46 .79 RPM |
SRP051959_lymph_node | 0 .00 RPM | 30 .82 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 30 .44 RPM |
SRP051959_spleen | 0 .00 RPM | 35 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019344 | 5 retrocopies | |
Homo sapiens | ENSG00000152484 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000006269 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021425 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000323 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000030639 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005232 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000005727 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000012960 | 2 retrocopies |