Parental gene: | USP12, ENSPTRG00000005727 |
| Aliases: | USP12, USP12P1 |
| Description: | Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:H2Q7B8] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 13:26627661..26734449(-) |
>ENSPTRG00000005727
ATGGAAATCCTAATGACAGTCTCCAAATTCGCCTCCATCTGTACCATGGGCGCCAATGCTTCGGCATTAGAGAAAGAGAT
TGGTCCAGAACAGTTTCCGGTCAATGAGCACTATTTTGGATTAGTCAATTTTGGGAATACCTGCTACTGCAATTCAGTTC
TTCAAGCACTTTATTTTTGTCGTCCATTTCGGGAAAAAGTTCTTGCGTATAAGAGTCAACCTAGGAAAAAGGAGAGCCTT
CTTACATGCTTAGCAGATCTCTTCCATAGCATAGCCACTCAGAAGAAAAAGGTTGGAGTAATACCCCCTAAGAAGTTCAT
CACAAGATTACGGAAAGAAAACGAGCTTTTTGACAACTACATGCAACAAGATGCCCATGAATTCTTAAATTACCTACTAA
ATACAATTGCTGATATTTTACAAGAAGAGAGAAAGCAGGAAAAACAAAATGGTCGCTTACCTAATGGTAATATTGATAAT
GAAAATAATAACAGCACACCAGACCCAACGTGGGTTCATGAGATTTTTCAGGGAACATTAACTAATGAAACCAGATGTCT
TACTTGTGAAACTATAAGCAGCAAAGATGAAGATTTTTTAGACCTTTCTGTTGACGTGGAACAAAATACATCAATTACTC
ACTGCTTAAGAGGTTTCAGCAACACAGAAACTCTGTGCAGTGAATACAAGTATTACTGTGAAGAGTGTCGCAGCAAACAG
GAAGCACACAAACGGATGAAAGTTAAAAAACTGCCCATGATTCTAGCTCTACACCTGAAGAGATTTAAATATATGGATCA
ACTTCATCGATATACAAAACTCTCTTACCGGGTAGTTTTTCCTTTAGAACTTCGTCTGTTTAACACTTCAGGTGATGCCA
CCAATCCAGACAGAATGTACGACCTTGTTGCTGTTGTGGTTCACTGTGGAAGTGGTCCCAATCGAGGCCATTATATTGCA
ATAGTTAAGAGTCATGATTTTTGGTTGTTGTTTGATGACGACATTGTAGAAAAAATAGATGCACAAGCTATTGAAGAATT
CTACGGGTTGACATCAGATATCTCAAAGAACTCTGAGTCTGGTTACATCCTTTTCTATCAGTCTCGGGACTGA
ATGGAAATCCTAATGACAGTCTCCAAATTCGCCTCCATCTGTACCATGGGCGCCAATGCTTCGGCATTAGAGAAAGAGAT
TGGTCCAGAACAGTTTCCGGTCAATGAGCACTATTTTGGATTAGTCAATTTTGGGAATACCTGCTACTGCAATTCAGTTC
TTCAAGCACTTTATTTTTGTCGTCCATTTCGGGAAAAAGTTCTTGCGTATAAGAGTCAACCTAGGAAAAAGGAGAGCCTT
CTTACATGCTTAGCAGATCTCTTCCATAGCATAGCCACTCAGAAGAAAAAGGTTGGAGTAATACCCCCTAAGAAGTTCAT
CACAAGATTACGGAAAGAAAACGAGCTTTTTGACAACTACATGCAACAAGATGCCCATGAATTCTTAAATTACCTACTAA
ATACAATTGCTGATATTTTACAAGAAGAGAGAAAGCAGGAAAAACAAAATGGTCGCTTACCTAATGGTAATATTGATAAT
GAAAATAATAACAGCACACCAGACCCAACGTGGGTTCATGAGATTTTTCAGGGAACATTAACTAATGAAACCAGATGTCT
TACTTGTGAAACTATAAGCAGCAAAGATGAAGATTTTTTAGACCTTTCTGTTGACGTGGAACAAAATACATCAATTACTC
ACTGCTTAAGAGGTTTCAGCAACACAGAAACTCTGTGCAGTGAATACAAGTATTACTGTGAAGAGTGTCGCAGCAAACAG
GAAGCACACAAACGGATGAAAGTTAAAAAACTGCCCATGATTCTAGCTCTACACCTGAAGAGATTTAAATATATGGATCA
ACTTCATCGATATACAAAACTCTCTTACCGGGTAGTTTTTCCTTTAGAACTTCGTCTGTTTAACACTTCAGGTGATGCCA
CCAATCCAGACAGAATGTACGACCTTGTTGCTGTTGTGGTTCACTGTGGAAGTGGTCCCAATCGAGGCCATTATATTGCA
ATAGTTAAGAGTCATGATTTTTGGTTGTTGTTTGATGACGACATTGTAGAAAAAATAGATGCACAAGCTATTGAAGAATT
CTACGGGTTGACATCAGATATCTCAAAGAACTCTGAGTCTGGTTACATCCTTTTCTATCAGTCTCGGGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 42 .08 RPM |
| SRP007412_cerebellum | 43 .88 RPM |
| SRP007412_heart | 34 .10 RPM |
| SRP007412_kidney | 42 .03 RPM |
| SRP007412_liver | 32 .83 RPM |
| SRP007412_testis | 40 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000019344 | ortholog_one2one | 5 retrogenes | |
| Homo sapiens | ENSG00000152484 | ortholog_one2one | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000006269 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000021425 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000323 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000030639 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005232 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000012960 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1701 | 72.05 | 79.46 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2209 | 91.67 | 83.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_3143 | 94.62 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000005727 retrocopies