RetrogeneDB ID: | retro_cjac_4011 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | GL288206.1:10357..11034(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | USP12P1 | ||
Ensembl ID: | ENSCJAG00000019344 | ||
Aliases: | USP12P1, USP12 | ||
Description: | Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:F7FL24] |
Percent Identity: | 87.67 % |
Parental protein coverage: | 61.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAY |
MEILMTVSKF.SICT..ANASALEK.IGPEQFP.NEHYFGLV.F.NTCYCNSVLQALYFCRPFREK.LAY | |
Retrocopy | MEILMTVSKFSSICTTSANASALEKQIGPEQFPLNEHYFGLVSFVNTCYCNSVLQALYFCRPFREKFLAY |
Parental | KSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQD-AHEFLNYLLNTIADI |
KSQPRKKESL.TCLADLFHS.ATQKKKVGVI.PKKFITRLRKENELFDN..QQD..HEFL.YLLNTIAD. | |
Retrocopy | KSQPRKKESLRTCLADLFHSTATQKKKVGVILPKKFITRLRKENELFDNDIQQD<SHEFLHYLLNTIADV |
Parental | LQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQN |
LQ.ERKQEKQN..LPN.NIDNENNNSTPD.T.VHEIFQGTLTNET.CLT.ETI.SKDEDFLDLSVDV.QN | |
Retrocopy | LQKERKQEKQNCHLPNDNIDNENNNSTPDQT*VHEIFQGTLTNETTCLTYETIGSKDEDFLDLSVDVKQN |
Parental | TSITHCLRGFSNTETLC |
TSITHCLRGFSN.ETLC | |
Retrocopy | TSITHCLRGFSNRETLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 58 .04 RPM |
SRP051959_heart | 0 .00 RPM | 52 .78 RPM |
SRP051959_kidney | 0 .00 RPM | 54 .11 RPM |
SRP051959_liver | 0 .00 RPM | 39 .70 RPM |
SRP051959_lung | 0 .00 RPM | 46 .79 RPM |
SRP051959_lymph_node | 0 .00 RPM | 30 .82 RPM |
SRP051959_skeletal_muscle | 0 .04 RPM | 30 .44 RPM |
SRP051959_spleen | 0 .00 RPM | 35 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019344 | 5 retrocopies | |
Homo sapiens | ENSG00000152484 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000006269 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021425 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000323 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000030639 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005232 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000005727 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000012960 | 2 retrocopies |