Parental gene: | ENSCJAG00000020803 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:35078347..35128921(+) |
>ENSCJAG00000020803
ATGGCAGTGACCAAGGAGCTCTTACAAATGGACCTGTACGCGCTGCTAGGCATTGAGGAGAAGGCGGCAGACAAAGAGGT
GAAGAAGGCATTTAGGCAGAAGGCCCTCTCCTGCCACCCAGACAAAAATCCAGATAATCCCAGAGCAGCTGAACTCTTCC
ACCAGCTTTCTCAGGCCTTGGAGGTGCTGACCGACGCTGCTGCCAGGGCTGCCTATGACAAGGTCAGGAAAGCCAAGAAG
CAGGCAGCAGAGAGGACCCAGAAACTTGATGAGAAAAGGAAGAAAGTGAAGCTTGATCTGGAGGCCCGGGAACGGCAGGC
CCAGGCCCAGGAGAGTGAGGAGGAGGAGGAGAGCCGGAGCACCAGGACACTAGAGCAAGAGATCGAACGCCTGAGAGAAG
AGGGTTCCCGGCAGCTGGAGGAACAGCAGAGGCTGATCCGGGAGCAAATACGCCAGGACCATGACCAGAGGTTGAGAGGA
AAGACAGAAAATACTGAAGGCCAAGGAACCCCCAAACTAAAGCTAAAATGGAAGTGCAAGAAGGAGGATGAGTCAAAAGG
TGGCTACTCCAAAGACGTCCTTCTACAGCTTTTGCAAAAGTATGGTGAGGTTCTCAACCTGGTACTTTCCAGTAAGAAGG
CAGGCACTGCTGTGGTGGAGTTTGCGACTGTCAGGGCTGCGGAGCTGGCTGTCCAGAATGAAGTTGGCCTGGTGGACAAC
CCTCTGAAGATTTCCTGGTTGGAGGGACAGCCCCAGGACGCCATGGGCCGCAGCCACCCAGGACTGTCAAAGGGCTCAGT
GGTGTCGGAGAGGGACTACGAGAGCCTCGTCATGATGCGCATGCGCCAGGCGGCTGAGCGGCAACAGCTGATTGCACGGA
TGCAGCGGGAAGACCAGGAGGGGCCGCCCACGTAG
ATGGCAGTGACCAAGGAGCTCTTACAAATGGACCTGTACGCGCTGCTAGGCATTGAGGAGAAGGCGGCAGACAAAGAGGT
GAAGAAGGCATTTAGGCAGAAGGCCCTCTCCTGCCACCCAGACAAAAATCCAGATAATCCCAGAGCAGCTGAACTCTTCC
ACCAGCTTTCTCAGGCCTTGGAGGTGCTGACCGACGCTGCTGCCAGGGCTGCCTATGACAAGGTCAGGAAAGCCAAGAAG
CAGGCAGCAGAGAGGACCCAGAAACTTGATGAGAAAAGGAAGAAAGTGAAGCTTGATCTGGAGGCCCGGGAACGGCAGGC
CCAGGCCCAGGAGAGTGAGGAGGAGGAGGAGAGCCGGAGCACCAGGACACTAGAGCAAGAGATCGAACGCCTGAGAGAAG
AGGGTTCCCGGCAGCTGGAGGAACAGCAGAGGCTGATCCGGGAGCAAATACGCCAGGACCATGACCAGAGGTTGAGAGGA
AAGACAGAAAATACTGAAGGCCAAGGAACCCCCAAACTAAAGCTAAAATGGAAGTGCAAGAAGGAGGATGAGTCAAAAGG
TGGCTACTCCAAAGACGTCCTTCTACAGCTTTTGCAAAAGTATGGTGAGGTTCTCAACCTGGTACTTTCCAGTAAGAAGG
CAGGCACTGCTGTGGTGGAGTTTGCGACTGTCAGGGCTGCGGAGCTGGCTGTCCAGAATGAAGTTGGCCTGGTGGACAAC
CCTCTGAAGATTTCCTGGTTGGAGGGACAGCCCCAGGACGCCATGGGCCGCAGCCACCCAGGACTGTCAAAGGGCTCAGT
GGTGTCGGAGAGGGACTACGAGAGCCTCGTCATGATGCGCATGCGCCAGGCGGCTGAGCGGCAACAGCTGATTGCACGGA
TGCAGCGGGAAGACCAGGAGGGGCCGCCCACGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 5 .61 RPM |
| SRP051959_skeletal_muscle | 3 .06 RPM |
| SRP051959_lymph_node | 5 .91 RPM |
| SRP051959_lung | 5 .84 RPM |
| SRP051959_liver | 2 .53 RPM |
| SRP051959_kidney | 5 .15 RPM |
| SRP051959_heart | 3 .47 RPM |
| SRP051959_colon | 3 .02 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000014110 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000104129 | ortholog_one2many | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000051 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005641 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000014835 | ortholog_many2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000013160 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000034278 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000003257 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006360 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006929 | ortholog_one2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000012368 | ortholog_many2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_738 | 81.99 | 89.47 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_820 | 84.09 | 99.34 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1013 | 78.46 | 80.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_4017 | 71.84 | 90.79 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000020803 retrocopies